PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462848225
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 238aa    MW: 25741 Da    PI: 8.6524
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462848225genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.12.7e-3160118259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY+ eHnh+
  462848225  60 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCMARKQVERSRSDPNMLVITYTAEHNHP 118
                699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081133.24754120IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.6E-3157120IPR003657WRKY domain
SuperFamilySSF1182907.72E-2758120IPR003657WRKY domain
SMARTSM007744.3E-3859119IPR003657WRKY domain
PfamPF031063.9E-2661118IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MTGATADVDG DDAIIRSSPV TPASAVHQMM KRKNDVKKVV CIPAPPPASS RPGGGEVIPS  60
DLWAWRKYGQ KPIKGSPYPR GYYRCSSSKG CMARKQVERS RSDPNMLVIT YTAEHNHPWP  120
MQRNLLAGYS RPHTHVSTIC KKRNSCRVDP TSPSPSSKNI DQNVFVSGDL EYQQSTSMVE  180
GDVAAYGACA VGALSREGVV MPVPTSCNGI QPADEVFAAL EELESSNNPV NTNAYSRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-2533120279Disease resistance protein RRS1
5w3x_D5e-2533120279Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462848225
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021317942.11e-109probable WRKY transcription factor 35 isoform X2
TrEMBLA0A0A9QAZ11e-117A0A0A9QAZ1_ARUDO; Uncharacterized protein
STRINGSb01g000696.11e-107(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134662832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.11e-49WRKY DNA-binding protein 35