PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462848327
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NF-YC
Protein Properties Length: 102aa    MW: 10879.3 Da    PI: 4.7782
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462848327genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC100.31.5e-3116438101
      NF-YC  38 misaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprdel 101
                m  aeaPv++++ace+filelt r w haeenkrrtl+ksdiaaa++rt++fdflvdivprd+ 
  462848327   1 MTPAEAPVVFARACEMFILELTHRGWAHAEENKRRTLQKSDIAAAIARTEVFDFLVDIVPRDDA 64 
                5679*********************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471137.54E-19361IPR009072Histone-fold
Gene3DG3DSA:1.10.20.103.2E-24361IPR009072Histone-fold
PfamPF008086.8E-10546IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MTPAEAPVVF ARACEMFILE LTHRGWAHAE ENKRRTLQKS DIAAAIARTE VFDFLVDIVP  60
RDDAKDADAA AAAAAAAAAG IPRPAAGVPA TDPLAYYYVP QQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B3e-321613595NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13339RRTLQKS
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462848327
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1004491e-110FP100449.1 Phyllostachys edulis cDNA clone: bphyst023f20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957138.11e-55nuclear transcription factor Y subunit C-6
SwissprotQ9XE338e-47NFYC6_ORYSJ; Nuclear transcription factor Y subunit C-6
TrEMBLA0A368Q2Y83e-54A0A368Q2Y8_SETIT; Uncharacterized protein
STRINGGRMZM2G078691_P018e-53(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38563676
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.34e-32nuclear factor Y, subunit C3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]