PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462848579

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

bHLH

Protein Properties

Length: 182aa MW: 19768.8 Da PI: 10.5116

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462848579	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.5	3.1e-05	72	106	15	54
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ ++ L++l+ + +K + a++L +A+eYIk L 462848579 72 KLGDRVTALQQLVSPF-----GKTDTASVLHEAIEYIKFL 106 5556666777777776.....8****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.611	57	106	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.92E-5	67	111	No hit	No description
SuperFamily	SSF47459	1.57E-11	67	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-8	71	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MMKPPFPQQQ QPILSQALVE SKRLKADIGG VQEACSSVTR RSSVPDSPAV AAKRPRIETP 60 TPLPTFKVRK EKLGDRVTAL QQLVSPFGKT DTASVLHEAI EYIKFLHDQV ASLTSPYLRC 120 GRPVQPQKQQ GSSKAKDLRS RGLCLVPVAS TYTVANDDAG VLAPNIWGHV SVEKLGGTTR 180 KS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462848579

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT837834	6e-71	CT837834.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129D11, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025806482.1	7e-65	transcription factor bHLH112-like isoform X2
Swissprot	Q94JL3	2e-40	BH112_ARATH; Transcription factor bHLH112
TrEMBL	A0A2T7EBW8	1e-63	A0A2T7EBW8_9POAL; Uncharacterized protein
STRING	Si022548m	2e-63	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2970	34	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.1	3e-43	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chen HC, et al. The function of OsbHLH068 is partially redundant with its homolog, AtbHLH112, in the regulation of the salt stress response but has opposite functions to control flowering in Arabidopsis. Plant Mol. Biol., 2017. 94(4-5): p. 531-548 [PMID:28631168]