PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462848916
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family YABBY
Protein Properties Length: 197aa    MW: 21903.9 Da    PI: 9.0039
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462848916genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY229.67.9e-7161685170
      YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas.qllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklse 103
                  +++vCyv+CnfCnt+lavsvP++s++++vtvrCGhC++llsvnl+  + q l+ ++ l+e+++++ ++   + ++++   +  ++  s++ +  ++ +
  462848916   6 APADHVCYVHCNFCNTVLAVSVPTNSVLTIVTVRCGHCANLLSVNLRGLMmQSLPEQDPLQENIRPHGVNG--TPRDQFGHFEFGSS--SSKFRLPMMYS 101
                5789******************************************98764899**********9995543..33444554444444..44444555666 PP

      YABBY 104 nedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                 ++++++++  + rPPekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWah+P+i fgl
  462848916 102 AQNDHLQEQALAARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIQFGL 168
                666666666779*****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.5E-707168IPR006780YABBY protein
SuperFamilySSF470952.36E-8113162IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.1E-5115162IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0009933Biological Processmeristem structural organization
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010093Biological Processspecification of floral organ identity
GO:0010154Biological Processfruit development
GO:0010158Biological Processabaxial cell fate specification
GO:0010159Biological Processspecification of organ position
GO:0010450Biological Processinflorescence meristem growth
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MSAQIAPADH VCYVHCNFCN TVLAVSVPTN SVLTIVTVRC GHCANLLSVN LRGLMMQSLP  60
EQDPLQENIR PHGVNGTPRD QFGHFEFGSS SSKFRLPMMY SAQNDHLQEQ ALAARPPEKR  120
QRVPSAYNRF IKEEIRRIKA NNPDISHREA FSTAAKNWAH YPNIQFGLSP GREGGKKLVD  180
ETVAAVTSAP TKIQGFY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00620PBMTransfer from AT2G45190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462848916
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804908.11e-112protein YABBY 6-like isoform X2
SwissprotQ2QM173e-94YAB6_ORYSJ; Protein YABBY 6
TrEMBLA0A0A8Y1511e-120A0A0A8Y151_ARUDO; Uncharacterized protein
STRINGSb08g022030.11e-110(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.11e-57YABBY family protein