PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462849032
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C2H2
Protein Properties Length: 190aa    MW: 19598.9 Da    PI: 7.0012
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462849032genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000294567123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               +kC+ CgksF +   L  H  +H
  462849032 45 FKCSVCGKSFGSYQALGGHKTSH 67
               89********9999888887776 PP
2zf-C2H213.30.00026113135123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC++C+k F++   L  H r+H
  462849032 113 HKCSICHKEFPTGQALGGHKRKH 135
                79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.1E-134569IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.7574572IPR007087Zinc finger, C2H2
SuperFamilySSF576673.6E-94567No hitNo description
SMARTSM003550.0114567IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.9E-44570IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
SuperFamilySSF576673.6E-9108135No hitNo description
PfamPF139128.3E-13112137IPR007087Zinc finger, C2H2
PROSITE profilePS501579.162113135IPR007087Zinc finger, C2H2
SMARTSM003550.038113135IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280115135IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MSSAMELLHA VLPEQQHEEE AAALTTSSSG EEGGHVPQGA AAAEFKCSVC GKSFGSYQAL  60
GGHKTSHRAK QPTPPPVEAP VPPPAELIRE PATSSTAAAS SDGGAAAPSS RVHKCSICHK  120
EFPTGQALGG HKRKHYDGGA ASASASVTAA AAETSESVWR CTAKAGKMWL EDEEVQSPLA  180
FKKPRLLMTA
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462849032
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008644480.11e-58zinc finger protein 1
SwissprotQ424304e-55ZFP1_WHEAT; Zinc finger protein 1
TrEMBLA0A0Y0SZ203e-69A0A0Y0SZ20_9POAL; C2H2-type zinc finger protein
STRINGGRMZM2G035103_P015e-58(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.23e-21zinc-finger protein 2