PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462849400

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

NAC

Protein Properties

Length: 340aa MW: 38510.1 Da PI: 8.24

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462849400	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	105.6	6.3e-33	47	205	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpk...........kvkaeekewyfFskrdkkyatgkrknra.... 77 +p+G++F+P+d+el+ ++L+ v+++ +++ +i+ +i++++P++Lp +v+ + + +fF++++k+y++g+rk+r+ 462849400 47 MPAGVKFDPSDQELI-HHLQTMVDEEGSRAHPligdfipTIQGEdGICYTHPENLPGeyltlvpgrgmCVTRNGLSKHFFHRSSKAYTNGTRKRRKihaq 145 699**********.99**9994443244555444666647******548999998876554555588**************87999 PP NAM 78 ........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l 462849400 146 rnlnssdnAVEMRWHKTGKTRPVIV-GGRQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 205 9999888766899********.99********5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.14E-33	40	222	IPR003441	NAC domain
PROSITE profile	PS51005	29.607	47	222	IPR003441	NAC domain
Pfam	PF02365	1.3E-14	48	205	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
EHPGSKISSS CSSELTDGKL EERRNSTSRS CPSCGHEIDC NTDMIGMPAG VKFDPSDQEL 60 IHHLQTMVDE EGSRAHPLIG DFIPTIQGED GICYTHPENL PGEYLTLVPG RGMCVTRNGL 120 SKHFFHRSSK AYTNGTRKRR KIHAQRNLNS SDNAVEMRWH KTGKTRPVIV GGRQKGCKKI 180 LVLYTNFGKN RKPEKTNWVM HQYHLGDQEK DGELVVSKVF YQTQPRQHTA TAAEQRMMNG 240 DREAEASETM RDVLSGCAAA TATSSIVLMQ QQQQRRMNQA DVQFSVPHSV KRSHEEKQQK 300 EEVERRFAGL EELIQGASTQ SETHLPYRYW PPDRNQDQHG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462849400

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004960907.1	1e-139	NAC domain-containing protein 73
Swissprot	Q9M0F8	7e-97	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A1E5W3H8	1e-125	A0A1E5W3H8_9POAL; NAC domain-containing protein 73
STRING	Pavir.J36494.1.p	1e-125	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1453	38	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	7e-99	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]