PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462849571

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

Protein Properties

Length: 142aa MW: 16342.4 Da PI: 9.4596

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462849571	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	53.9	3.3e-17	32	107	9	85
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkld 85 + k++ l +p +f ++hg+ +++ +tl+ grsW+v+l++ r +++r+ l+ GW +F+ +ngL++gD+++Fk+ 462849571 32 RSKKNQYLHVPVPFQDAHGYAERRRVTLR---MGGRSWTVNLKHskRTRGNRTALKYGWHQFCLDNGLRVGDICIFKVL 107 45677999*********9988865555...489***8865666666***********************54 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	6.6E-26	17	136	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.34E-19	18	109	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.50E-14	22	105	No hit	No description
SMART	SM01019	1.9E-5	22	115	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.323	24	137	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.6E-14	33	108	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MGSSEFYRTL FPGDCKRKLS QFAVTLRPSN LRSKKNQYLH VPVPFQDAHG YAERRRVTLR 60 MGGRSWTVNL KHSKRTRGNR TALKYGWHQF CLDNGLRVGD ICIFKVLPDG DGGGEDDDYD 120 DDEEEGHVLK VEVRKKDGTF LH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462849571

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004985224.1	6e-47	B3 domain-containing protein Os03g0212300
Swissprot	Q10Q26	1e-45	Y3123_ORYSJ; B3 domain-containing protein Os03g0212300
TrEMBL	A0A0A9SID0	2e-47	A0A0A9SID0_ARUDO; Uncharacterized protein
STRING	Pavir.Ia04671.1.p	6e-47	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4748	32	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24645.1	3e-10	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]