PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462849574
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 143aa    MW: 16288.2 Da    PI: 7.2035
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462849574genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.41.3e-13581103687
                EEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
         B3  36 ltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                +tl+   g sW+v+l++  r +++r+ l+ GW +F+ +ngL++gD+++Fk+ ++
  462849574  58 VTLRM-GGPSWTVNLKHskRTRGDRTALKYGWHQFCLDNGLRVGDICIFKVLRE 110
                44333.6899*****8865555556*************************7665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.64446138IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.0E-1751138IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-1251111IPR015300DNA-binding pseudobarrel domain
CDDcd100172.68E-1054106No hitNo description
PfamPF023625.8E-1157111IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MKGSEHNVST CSVPIPWTEC FLYPGGSRNK DEQHIHPYGS CSCQHVPLAF QDAERRRVTL  60
RMGGPSWTVN LKHSKRTRGD RTALKYGWHQ FCLDNGLRVG DICIFKVLRE GDGGGEDDDY  120
DDHDDENHVL KVKVRKKDGT FLD
Cis-element ? help Back to Top
SourceLink
PlantRegMap462849574
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985224.14e-31B3 domain-containing protein Os03g0212300
SwissprotQ10Q261e-31Y3123_ORYSJ; B3 domain-containing protein Os03g0212300
TrEMBLA0A0A9SID02e-32A0A0A9SID0_ARUDO; Uncharacterized protein
TrEMBLA0A0E0CX335e-31A0A0E0CX33_9ORYZ; Uncharacterized protein
STRINGPavir.Ia04671.1.p5e-31(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47483264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31630.15e-07B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]