PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462849655

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

MYB_related

Protein Properties

Length: 388aa MW: 43408.5 Da PI: 9.9261

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462849655	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.3	1.5e-07	110	151	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +W++eE ++l ++++++ + + Ia ++++ R+ +++ksr++ 462849655 110 AWSKEETDQLFELCERFDLR-FIVIADRFPTDRSVEDLKSRYY 151 7*****************.*******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF16282	7.6E-30	83	157	IPR032563	DAMP1, SANT/Myb-like domain
SuperFamily	SSF46689	3.67E-6	107	164	IPR009057	Homeodomain-like
SMART	SM00717	3.6E-6	107	156	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.4E-5	110	155	IPR009057	Homeodomain-like
CDD	cd11658	8.11E-18	111	153	No hit	No description
Pfam	PF05499	1.0E-6	258	321	IPR008468	DNA methyltransferase 1-associated 1

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0000812	Cellular Component	Swr1 complex
GO:0035267	Cellular Component	NuA4 histone acetyltransferase complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MDAKDILGLP KTPFASSQEK KARTPKEPQR KPDGVSREVY ALTGGVGMAP LMPTVEASHL 60 KRRPAAEKEK VRVVNGVQPT GDYQFAKYNK KVDVLKYTDE EYEKYLIDPA WSKEETDQLF 120 ELCERFDLRF IVIADRFPTD RSVEDLKSRY YSATRCLLIH RARSFEEVSG NPLVKTLAEA 180 KRILESRAAS KNADEAGVPS SSENAMVPVE GVSPLSGTQP PLTNPYAAAN SSIPNSLRTL 240 RVYLRTYALD QMIQAASASA GLRIIKRVDQ TLQDLGVHLK PKVPTKAVCV EHLELRNEIL 300 TLLNLQKQLQ NKEAEVSANR ESSFMEAPST PMRSNRDMDR PFVPDTIGFT GERAGKRDHK 360 RKSTTGRFID TPPSPPQSKR PRKLKASD

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MDAKDILGLP KTPFASSQEK KARTPKEPQR KPDGVSREVY ALTGGVGMAP LMPTVEASHL  60
KRRPAAEKEK VRVVNGVQPT GDYQFAKYNK KVDVLKYTDE EYEKYLIDPA WSKEETDQLF  120
ELCERFDLRF IVIADRFPTD RSVEDLKSRY YSATRCLLIH RARSFEEVSG NPLVKTLAEA  180
KRILESRAAS KNADEAGVPS SSENAMVPVE GVSPLSGTQP PLTNPYAAAN SSIPNSLRTL  240
RVYLRTYALD QMIQAASASA GLRIIKRVDQ TLQDLGVHLK PKVPTKAVCV EHLELRNEIL  300
TLLNLQKQLQ NKEAEVSANR ESSFMEAPST PMRSNRDMDR PFVPDTIGFT GERAGKRDHK  360
RKSTTGRFID TPPSPPQSKR PRKLKASD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3hm5_A	9e-21	82	151	4	77	DNA methyltransferase 1-associated protein 1
4iej_A	9e-21	82	151	4	77	DNA methyltransferase 1-associated protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305\|Ref.5}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462849655

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP097402	1e-147	FP097402.1 Phyllostachys edulis cDNA clone: bphylf054o08, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004985656.1	0.0	SWR1-complex protein 4
Swissprot	Q8VZL6	1e-143	SWC4_ARATH; SWR1-complex protein 4
TrEMBL	K4AA36	0.0	K4AA36_SETIT; Uncharacterized protein
STRING	Si035742m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6153	12	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47210.1	1e-130	MYB_related family protein

Publications ? help Back to Top
Gómez-Zambrano Á, et al. Arabidopsis SWC4 Binds DNA and Recruits the SWR1 Complex to Modulate Histone H2A.Z Deposition at Key Regulatory Genes. Mol Plant, 2018. 11(6): p. 815-832 [PMID:29604400]