PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462849749
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C2H2
Protein Properties Length: 629aa    MW: 70079.8 Da    PI: 8.6777
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462849749genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.8e-056688123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               y C+ C+k F r  nL+ H r H
  462849749 66 YICEVCHKGFQRDQNLQLHRRGH 88
               89*******************88 PP
2zf-C2H214.97.8e-05205227123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                y C+ C+k F r  nL+ H r H
  462849749 205 YICEVCHKGFQRDQNLQLHRRGH 227
                89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.3E-56588IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.77E-66588No hitNo description
PROSITE profilePS5015710.7416688IPR007087Zinc finger, C2H2
PfamPF128740.026688No hitNo description
SMARTSM003550.0386688IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SMARTSM0035549107137IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.6E-4130163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.77E-6137162No hitNo description
SMARTSM00355230142162IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.4E-6204227No hitNo description
Gene3DG3DSA:3.30.160.603.3E-5204227IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.741205227IPR007087Zinc finger, C2H2
PfamPF128740.02205227No hitNo description
SMARTSM003550.038205227IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280207227IPR007087Zinc finger, C2H2
SMARTSM0035549246276IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.6E-4269302IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.4E-6276301No hitNo description
SMARTSM00355230281301IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
MSHTSEEESL NNFQQQAKLE ACEIGSSKAD TVMPVVKKRR GHPGNLDPDV EVVALSPKTL  60
LATNRYICEV CHKGFQRDQN LQLHRRGHNL PWKLKQRSST EAKKKVYVCP EVTCPHHEAS  120
RALGDLTGIK KHYSRKHGEK KWKCDRCSKK YAVQSDWKAH TKICGTKEYR CDCGTIFSRK  180
DSFITHPDVE VVALSPKTLL ATNRYICEVC HKGFQRDQNL QLHRRGHNLP WKLKQRSSTE  240
AKKKVYVCPE VTCPHHEASR ALGDLTGIKK HYSRKHGEKK WKCDRCSKKY AVQSDWKAHT  300
KICGTKEYRC DCGTIFSRKD SFITHRAFCD ALAEDNSRVN HTLATMVGSL HGQQQDIFSH  360
GVPSFTASPT DVISNLSTND HNSDSHLRTL SPYALITRNT ALFSNQISQK DSGFPLDGSA  420
SSFPYMSMNS PYMSATALLQ KAAEMGAKTS HDPISPLLLK SFPSNVTTPR DHMDISSGSQ  480
GDSLGNSAAN SVGIKTADDD GSYMSGRSNI LMNSPWASSC MRPTTVPLIG LMNNPFVMRA  540
EKESPSIFSE SQTQHNRQGN ISGVGDAGLT QDFLGLGGNG NLDISSETYN ADVTELSYSD  600
EQQKSQEHIY SYHQSSLDSA ALEKPIWES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-32138340366Zinc finger protein JACKDAW
5b3h_F6e-32138340366Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462849749
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1848811e-163KF184881.1 Saccharum hybrid cultivar R570 clone BAC 172K24 complete sequence.
GenBankKF1849121e-163KF184912.1 Saccharum hybrid cultivar R570 clone BAC 254D06 complete sequence.
GenBankKF1849461e-163KF184946.1 Saccharum hybrid cultivar R570 clone BAC 166F02 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818794.10.0protein indeterminate-domain 2-like
TrEMBLA0A1E5VSU00.0A0A1E5VSU0_9POAL; Protein indeterminate-domain 2
STRINGPavir.Aa01904.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114253240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-97indeterminate(ID)-domain 2