PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462849770
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 197aa    MW: 21656.7 Da    PI: 10.2189
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462849770genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.13.7e-333794259
               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
               +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers++dp+vv++tYeg+H h+
  462849770 37 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSNDPSVVITTYEGQHCHH 94
               8******************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.2E-342195IPR003657WRKY domain
SuperFamilySSF1182901.19E-282894IPR003657WRKY domain
PROSITE profilePS5081129.8493196IPR003657WRKY domain
SMARTSM007743.4E-383695IPR003657WRKY domain
PfamPF031063.3E-263794IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MYVRTSKPPA PGKTKGQKRA RQPRFAFMTK SEIDHLEDGY RWRKYGQKAV KNSPFPRSYY  60
RCTNSKCTVK KRVERSSNDP SVVITTYEGQ HCHHTVTFPR AHLHALAGHM AFSAHHLYDH  120
LPPLQLPPAA MSSSPSSLLR PLHCNQELQA AASMYSLSTT ATTAAAGAAV STQSSTTMMS  180
SPASVVPAVD KGLLDDM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-272693774Probable WRKY transcription factor 4
2lex_A1e-272693774Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462849770
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586081e-84KU058608.1 UNVERIFIED: Panicum miliaceum WRKY8-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149447.14e-79probable WRKY transcription factor 57
TrEMBLA0A3B6C5U01e-79A0A3B6C5U0_WHEAT; Uncharacterized protein
TrEMBLA0A446M9N71e-79A0A446M9N7_TRITD; Uncharacterized protein
STRINGPavir.J09516.1.p2e-81(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21253796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.22e-55WRKY DNA-binding protein 57