PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462849800
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GRAS
Protein Properties Length: 181aa    MW: 19859.6 Da    PI: 9.2039
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462849800genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS40.15.4e-1327101276
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsse 76 
                v+lL++c   v++g + +a+ +L+++ +las d+  ++qRlaa+f+ ALa++l++ v++l++al++s++s++  se
  462849800  27 VRLLYRCGAEVAAGAFDRANLYLEQITQLASLDApHTLQRLAAVFADALARKLLNLVPGLSRALHMSSSSSSA-SE 101
                689*******************************99****************************999998433.22 PP
2GRAS49.67.2e-16103173307374
       GRAS 307 erhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg.yrveee..sgslvlgWkdrpLvsvSaWr 374
                 r++ +  W +r+e+aG++ v ls+  +++a+ ll+ +++ g y+v ++   + ++++W+++pL+s+SaWr
  462849800 103 LRRQLFDMWARRMEAAGMERVGLSYGGMNEARKLLQSCGWGGsYEVVHDarGQGFFFCWHRKPLYSISAWR 173
                5778899********************************55559999554367788**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035141.9E-1027101IPR005202Transcription factor GRAS
PfamPF035142.5E-13103173IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MLQDDAVSSA TSSLYSPSAH GYGGSWVRLL YRCGAEVAAG AFDRANLYLE QITQLASLDA  60
PHTLQRLAAV FADALARKLL NLVPGLSRAL HMSSSSSSAS EHLRRQLFDM WARRMEAAGM  120
ERVGLSYGGM NEARKLLQSC GWGGSYEVVH DARGQGFFFC WHRKPLYSIS AWRPAACRPS  180
S
Cis-element ? help Back to Top
SourceLink
PlantRegMap462849800
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9750393e-60EU975039.1 Zea mays clone 465792 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827468.12e-41scarecrow-like protein 3
TrEMBLA0A2T7CK843e-40A0A2T7CK84_9POAL; Uncharacterized protein
STRINGSb08g001190.11e-35(Sorghum bicolor)
STRINGAC198366.3_FGP0047e-36(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2554245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.14e-12scarecrow-like 3