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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | 462849901 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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| Family | C3H | ||||||||
| Protein Properties | Length: 305aa MW: 34581.1 Da PI: 8.8012 | ||||||||
| Description | C3H family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-CCCH | 21.8 | 3.3e-07 | 95 | 117 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27
C f++ +G Ck+G++CkF H++
462849901 95 GCTFYSCYGMCKFGPKCKFDHPM 117
5********************95 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50103 | 12.108 | 90 | 118 | IPR000571 | Zinc finger, CCCH-type |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046872 | Molecular Function | metal ion binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 305 aa Download sequence Send to blast |
LAPHPQTTNN GRLEVPNTIL AHDGAKQLEW ASSVPVGLYV VQRENVFLDR PDKHNTGDCK 60 FCTVCKFHHP KDRTVPVPNC ALRTIKLPLS PGEPGCTFYS CYGMCKFGPK CKFDHPMQAI 120 MSQLSNWGSI IVCRNKYFRL YWTLCIIKGE CISRQTRMSV LHVDPRLLVP HPQTTNNGRL 180 EVPNTTLAHD GVKQLEKGNP RMFSSFRLAL FQLDFIHYRD QNVGSTCRPE IVSLVLCASF 240 IIQRIKQFLF LITTNNGRLE VPNTTLAHDG ETTEKGIPRM FLSFRLAMPS WTLCSTEGEC 300 ISRQT |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | 462849901 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G16540.1 | 5e-35 | zinc finger nuclease 3 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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