PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462850118
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C2H2
Protein Properties Length: 249aa    MW: 29150.6 Da    PI: 10.3725
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462850118genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.8e-061941123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C+ C+k F r  nL+ H r H
  462850118 19 FVCEVCNKGFQREQNLQLHRRGH 41
               89*******************88 PP
2zf-C2H218.74.8e-06126148123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C+ C+k F r  nL+ H r H
  462850118 126 FVCEVCNKGFQREQNLQLHRRGH 148
                89*******************88 PP
3zf-C2H214.50.0001203225123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC +C+k++  +s+ k H +t+
  462850118 203 WKCDKCNKRYAVQSDWKAHSKTC 225
                58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.8E-61841IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.03E-91841No hitNo description
SMARTSM003550.00411941IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.0941941IPR007087Zinc finger, C2H2
PfamPF121711.3E-51941IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002802141IPR007087Zinc finger, C2H2
SuperFamilySSF576671.03E-9121148No hitNo description
Gene3DG3DSA:3.30.160.602.8E-6125148IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0041126148IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.094126148IPR007087Zinc finger, C2H2
PfamPF121711.3E-5126148IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280128148IPR007087Zinc finger, C2H2
SuperFamilySSF576676.17E-5190224No hitNo description
Gene3DG3DSA:3.30.160.601.5E-5191224IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355110203223IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
PDAEVIALSP RTLLATNRFV CEVCNKGFQR EQNLQLHRRG HNLPWKLKQK NPKEAQRRRV  60
YLCPEPSCVH HDPSRALGDL TGIKKHYCRK HGEKKWNSSV TIYDRSDPDA EVIALSPRTL  120
LATNRFVCEV CNKGFQREQN LQLHRRGHNL PWKLKQKNPK EAQRRRVYLC PEPSCVHHDP  180
SRALGDLTGI KKHYCRKHGE KKWKCDKCNK RYAVQSDWKA HSKTCGTREY RCDCGTLFSR  240
VRIRYMIGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-21199240344Zinc finger protein JACKDAW
5b3h_F6e-21199240344Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
UniProtTranscription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}.
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462850118
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7548651e-149AY754865.1 Zea mays INDETERMINATE-related protein 7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691544.11e-134PREDICTED: protein indeterminate-domain 13-like
SwissprotQ8GYC12e-84IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
SwissprotQ8RWX78e-85IDD6_ARATH; Protein indeterminate-domain 6, chloroplastic
SwissprotQ9ZUL32e-84IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLA0A0E0M4D13e-92A0A0E0M4D1_ORYPU; Uncharacterized protein
STRINGOB08G30010.11e-92(Oryza brachyantha)
STRINGOPUNC09G17530.15e-93(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14580.23e-87C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Bustillo-Avendaño E, et al.
    Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis.
    Plant Physiol., 2018. 176(2): p. 1709-1727
    [PMID:29233938]