PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462850210
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 257aa    MW: 27419 Da    PI: 10.088
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462850210genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY55.79.7e-18221257237
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEE CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkk 37 
                 Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+
  462850210 221 PDGCQWRKYGQKISKGNPCPRAYYRCTVApNCPVRKQ 257
                69**************************99******7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081118.418215257IPR003657WRKY domain
SuperFamilySSF1182901.96E-15218257IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.1E-16219257IPR003657WRKY domain
SMARTSM007744.6E-8220257IPR003657WRKY domain
PfamPF031063.5E-15222257IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MEVAVERPPV VKEEKMADAN KDMVTTSGSM KQEGGGSRLE AARAEMGEVR EENERLKAAL  60
SRIVSDYKSL QMHFLDVVKV HDEAAKPETA TKLPAEPKAP APVAADDDLV FLSLGTRSGA  120
NGGGRKGHER SASSGSGSGT AADDSHLSLG LGFRPGSSLT LSADDDKASA GPVLNIRLLP  180
RPPRLASRHA RAAPGTTRCS SRPRRLGFPS GSNATPPRYM PDGCQWRKYG QKISKGNPCP  240
RAYYRCTVAP NCPVRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap462850210
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0860062e-50BT086006.1 Zea mays full-length cDNA clone ZM_BFc0097G19 mRNA, complete cds.
GenBankEU9663572e-50EU966357.1 Zea mays clone 293867 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817880.12e-71probable WRKY transcription factor 72
TrEMBLA0A2T7DS738e-72A0A2T7DS73_9POAL; Uncharacterized protein
STRINGPavir.J22708.1.p4e-71(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120812938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.14e-21WRKY DNA-binding protein 72