PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462850279
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 174aa    MW: 19063.4 Da    PI: 8.4475
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462850279genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.42.6e-27113169157
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--S CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHn 57 
                ldDg++WrKYG+K vk+s++pr+YYrC+ +gC vkk+ver+ +dp++v++tY g+ +
  462850279 113 LDDGFKWRKYGKKAVKSSPNPRNYYRCSVEGCGVKKRVERDPDDPRYVVTTYDGSYR 169
                59***************************************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.4E-28100171IPR003657WRKY domain
SuperFamilySSF1182908.63E-25105173IPR003657WRKY domain
PROSITE profilePS5081129.367108173IPR003657WRKY domain
SMARTSM007749.2E-28113172IPR003657WRKY domain
PfamPF031062.0E-20114167IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MAASLGLCHE TLAYPPAASS YCFPPDLVAN NRAATNFAAM AGDDHYFPEL GVPPPVPPQV  60
FAGENEQMNM RSYVDHDGQW MSRSAACAVN GGGGAARASS RIGFRTRSAV DVLDDGFKWR  120
KYGKKAVKSS PNPRNYYRCS VEGCGVKKRV ERDPDDPRYV VTTYDGSYRY PIPI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-2598173277Probable WRKY transcription factor 4
2lex_A5e-2598173277Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462850279
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586132e-76KU058613.1 UNVERIFIED: Panicum miliaceum WRKY28-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818051.12e-49WRKY transcription factor WRKY24-like
TrEMBLA0A3L6SK851e-52A0A3L6SK85_PANMI; Putative WRKY transcription factor 58
STRINGPavir.Ea00274.1.p8e-48(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.19e-33WRKY DNA-binding protein 50