PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462850766
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 127aa    MW: 14467.2 Da    PI: 10.0559
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462850766genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM60.74.6e-1926114178
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknra..........t 78 
                lppGfrFhP+dee+++++L  k+ ++  +++ vi ev++ k+eP   p+  + ++ ++ew fFsk+d+ky t +r+nra          t
  462850766  26 LPPGFRFHPSDEEVISQFLMSKALHRL-SISGVIGEVNLDKSEPPLGPAssQKSKMREEWSFFSKKDSKYLTRTRTNRAtatasrtrraT 114
                79********************98876.66689***********98884222223445****************9999834444444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-1718120IPR003441NAC domain
PROSITE profilePS5100521.97326127IPR003441NAC domain
PfamPF023651.9E-1027121IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MSEVSVDNQA DEQVNVEDQA AWQLQLPPGF RFHPSDEEVI SQFLMSKALH RLSISGVIGE  60
VNLDKSEPPL GPASSQKSKM REEWSFFSKK DSKYLTRTRT NRATATASRT RRATRLGCWR  120
GYQALHR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in responses to drought stress and salt stress. Transactivates the stress response genes LEA19 and PM19L. {ECO:0000269|PubMed:19135985}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462850766
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses (PubMed:18813954, PubMed:19135985). Induced by drought stress (PubMed:19135985). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:19135985}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147731.12e-30uncharacterized protein LOC100281341
SwissprotQ2RB333e-18NAC45_ORYSJ; NAC domain-containing protein 45
TrEMBLA0A3L6DHX35e-29A0A3L6DHX3_MAIZE; NAC domain-containing protein 100
TrEMBLB6SUI06e-29B6SUI0_MAIZE; GRAB2 protein
STRINGGRMZM2G159500_P021e-29(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39610.11e-15NAC domain containing protein 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zheng X,Chen B,Lu G,Han B
    Overexpression of a NAC transcription factor enhances rice drought and salt tolerance.
    Biochem. Biophys. Res. Commun., 2009. 379(4): p. 985-9
    [PMID:19135985]