PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462850966

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

WRKY

Protein Properties

Length: 344aa MW: 37155.9 Da PI: 10.4883

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462850966	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.5	4.4e-31	278	335	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +d +++++tYegeHnh+ 462850966 278 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDSSMLIVTYEGEHNHT 335 9***********************988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	1.7E-17	228	274	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	9.9E-34	264	335	IPR003657	WRKY domain
PROSITE profile	PS50811	29.998	271	337	IPR003657	WRKY domain
SuperFamily	SSF118290	6.93E-27	274	335	IPR003657	WRKY domain
SMART	SM00774	1.6E-37	276	336	IPR003657	WRKY domain
Pfam	PF03106	8.0E-27	278	334	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005516	Molecular Function	calmodulin binding
GO:0005516	Molecular Function	calmodulin binding
GO:0005516	Molecular Function	calmodulin binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MEEVEEANRA AVESCHRVLA LLSQPQDPAQ LRSIAIGTDE ACTKFRKVVS LLSNGGGAGP 60 SGASGSHPKA KVVSRRQNSG FFSQKGFLDS NTPVVVLNSA HPSPSSAQVY PRNGALDAQS 120 VNPLGGPPKM VQPLSAHFQF GNVSSRYQFH NQQQKQKLQA EMFRRSNSGI NLKFDSTTGT 180 GTMSSARSFL SSLSMDGSVA SLDGKSSSFH LIGGPAMSDP VNAQQAPRRR CTGRGEDGTG 240 KCAVTGRCHC SKRSRKLRVK RSIKVPAISN KIADIPPDEY SWRKYGQKPI KGSPHPRGYY 300 KCSSVRGCPA RKHVERCVDD SSMLIVTYEG EHNHTRMPTQ SAQA

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MEEVEEANRA AVESCHRVLA LLSQPQDPAQ LRSIAIGTDE ACTKFRKVVS LLSNGGGAGP  60
SGASGSHPKA KVVSRRQNSG FFSQKGFLDS NTPVVVLNSA HPSPSSAQVY PRNGALDAQS  120
VNPLGGPPKM VQPLSAHFQF GNVSSRYQFH NQQQKQKLQA EMFRRSNSGI NLKFDSTTGT  180
GTMSSARSFL SSLSMDGSVA SLDGKSSSFH LIGGPAMSDP VNAQQAPRRR CTGRGEDGTG  240
KCAVTGRCHC SKRSRKLRVK RSIKVPAISN KIADIPPDEY SWRKYGQKPI KGSPHPRGYY  300
KCSSVRGCPA RKHVERCVDD SSMLIVTYEG EHNHTRMPTQ SAQA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	8e-21	269	338	7	75	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462850966

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025795417.1	0.0	protein WRKY1-like isoform X1
Swissprot	Q93WU6	4e-94	WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBL	A0A2S3IK15	0.0	A0A2S3IK15_9POAL; Uncharacterized protein
TrEMBL	A0A2T7C3I7	0.0	A0A2T7C3I7_9POAL; Uncharacterized protein
STRING	Pavir.Ia01239.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2859	38	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28650.1	2e-64	WRKY DNA-binding protein 74

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]