PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462851100
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 107aa    MW: 12055 Da    PI: 10.979
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462851100genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.4e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEde l  +++++G   +W + +++ g++R++k+c++rw++yl
        462851100 14 RGPWSPEEDEALRSYIQRHGIAgNWIALPKKAGLKRCGKSCRLRWLNYL 62
                     89******************889*************************7 PP
2Myb_DNA-binding262.2e-0867892346
                     -HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46
                     +W++Ia+ +  gRt++++k++w++
        462851100 67 RWSLIASQLK-GRTDNDVKNYWNT 89
                     5********9.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.924966IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-211265IPR009057Homeodomain-like
SMARTSM007171.5E-131393IPR001005SANT/Myb domain
PfamPF002491.8E-141462IPR001005SANT/Myb domain
SuperFamilySSF466891.63E-231492IPR009057Homeodomain-like
CDDcd001674.46E-81691No hitNo description
PfamPF002492.5E-66789IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-126799IPR009057Homeodomain-like
PROSITE profilePS500906.116791IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MGRTPCCDRA AVKRGPWSPE EDEALRSYIQ RHGIAGNWIA LPKKAGLKRC GKSCRLRWLN  60
YLRPDIRWSL IASQLKGRTD NDVKNYWNTK LKKRLVAGAA GTATATT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-1314957108B-MYB
1h8a_C5e-13129525128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462851100
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794162e-81HF679416.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB10 protein.
GenBankJF7566672e-81JF756667.1 Saccharum hybrid cultivar Co 740 MYB transcription factor MYB17 (MYB17) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968503.12e-59transcription factor RAX2
SwissprotQ9FKL26e-50MYB36_ARATH; Transcription factor MYB36
SwissprotQ9SJL75e-50RAX2_ARATH; Transcription factor RAX2
TrEMBLK3XL564e-58K3XL56_SETIT; Uncharacterized protein
STRINGSi002629m6e-59(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.13e-51myb domain protein 36
Publications ? help Back to Top
  1. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  2. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]