PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462851278
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 325aa    MW: 35035.8 Da    PI: 9.8646
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462851278genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.68.2e-31251309259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 D y+WrKYGqK++kgs++pr+YYrC+s  +Cp++k+ver+++dp+++++tYe++Hnh 
  462851278 251 ADNYSWRKYGQKPIKGSPHPRGYYRCSSMkDCPARKHVERCRSDPTMLIVTYENDHNHA 309
                69************************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.0E-13216248IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.806.2E-34238311IPR003657WRKY domain
PROSITE profilePS5081130.963245311IPR003657WRKY domain
SuperFamilySSF1182904.05E-27246311IPR003657WRKY domain
SMARTSM007744.7E-37250310IPR003657WRKY domain
PfamPF031063.0E-26252308IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MAVAAETDDA VARFGKVVAV LSDRLGHARA RVGKRSAPPV DASYLMDRPL KAPCQTPSIG  60
HLVTAPAPPL PATSTTPQSV VMMRSQETEV APAVAVVTPR ANRSLLQCRG VAEEQRKSCR  120
RCSRGEQQQQ QAKAQKSFLF DQTPSAEQFH IEVPVPAARG GGGAKEVISF SFDNNSVCTS  180
SAATSFFNSI NSHLISMSDA ATSSAATGKK ACGKRGEDGG VKCHCPKKKK PRDKRVVRVP  240
AISDKNADIP ADNYSWRKYG QKPIKGSPHP RGYYRCSSMK DCPARKHVER CRSDPTMLIV  300
TYENDHNHAQ PLDPAVLAAN AETCV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-202483111274WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462851278
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432529e-99AC243252.2 Panicum virgatum clone PV_ABa094-H10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022678752.11e-128protein WRKY1
TrEMBLK4AMM71e-127K4AMM7_SETIT; Uncharacterized protein
STRINGSi040171m1e-128(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127053036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.13e-39WRKY DNA-binding protein 21