PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462851572
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family M-type_MADS
Protein Properties Length: 105aa    MW: 11736.2 Da    PI: 11.7069
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462851572genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.92e-261058250
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
               ri+n   rqvtfskRr g++KKAeEL vLCda+va+i+fs tgkl  ++
  462851572 10 RIKNAAARQVTFSKRRRGLFKKAEELAVLCDADVALIVFSATGKLSQFA 58
               8*********************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.29E-24158IPR002100Transcription factor, MADS-box
SMARTSM004328.5E-33160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.011161IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-24323IPR002100Transcription factor, MADS-box
PfamPF003192.0E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-243859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MARERREIRR IKNAAARQVT FSKRRRGLFK KAEELAVLCD ADVALIVFSA TGKLSQFANL  60
VALLPAPCLV PFMLQILAVG FSHLFTLRFL APARSRVCLC VSKTM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-15158158MEF2C
5f28_B2e-15158158MEF2C
5f28_C2e-15158158MEF2C
5f28_D2e-15158158MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. May be required for spikelet (rice flower) development. {ECO:0000269|PubMed:15682279}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462851572
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN5995185e-67FN599518.1 Pennisetum glaucum MADS11 gene associated region.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810223.19e-30MADS-box transcription factor 22
SwissprotQ9XJ665e-30MAD22_ORYSJ; MADS-box transcription factor 22
TrEMBLA0A453PLK92e-30A0A453PLK9_AEGTS; Uncharacterized protein
STRINGTraes_6DL_D8C9E421C.23e-29(Triticum aestivum)
STRINGLPERR02G27330.13e-29(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154931117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-27MIKC_MADS family protein
Publications ? help Back to Top
  1. Lee S,Choi SC,An G
    Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses.
    Plant J., 2008. 54(1): p. 93-105
    [PMID:18182025]
  2. Lee S,Jeong DH,An G
    A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses.
    Plant Signal Behav, 2008. 3(7): p. 471-4
    [PMID:19704489]