PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462851806
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 302aa    MW: 33376.1 Da    PI: 7.5005
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462851806genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.3e-13131178355
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                + h ++ErrRR+++ + f  L +++P +     +K +K++iL  ++eY+k+L+
  462851806 131 QEHVIAERRRREKMQQQFVALATIVPDL-----TKTDKISILGSTIEYVKQLE 178
                5799***********************9.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.894128177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-11131178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-15132191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-17132188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.85E-11133182No hitNo description
SMARTSM003537.3E-13134183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MLSCQEPADE LAYVYQQEEQ PRMFGHPLPE AQQQPQYYTP PAAMAPPPNR FHPSRSLSSS  60
FPSFGAPALP SPSFGAVKTE PGQPSSSSPN ILSFGGQPPR TLSFSAGDWP DGIEAVQQVP  120
ERRSRAHLNT QEHVIAERRR REKMQQQFVA LATIVPDLTK TDKISILGST IEYVKQLEEK  180
VKALEKQSAP SEPTVFERKC RISSDNDAGT SSGAISGYIP TVEASIHGDT VLLKICCKER  240
RGVLVMVFSE IENHGLTIIN TSALPYTDSC LSVTVTAKAR LMILQMLFIQ LVLKYMLTLF  300
RN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136141ERRRRE
2137142RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMap462851806
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021316601.11e-115transcription factor bHLH18
RefseqXP_021316605.11e-115transcription factor bHLH18
TrEMBLA0A1B6QPJ61e-114A0A1B6QPJ6_SORBI; Uncharacterized protein
STRINGOB03G19470.11e-100(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64013149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.18e-30bHLH family protein