PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462851818
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HD-ZIP
Protein Properties Length: 167aa    MW: 18873.9 Da    PI: 11.9459
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462851818genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox37.34.8e-1245732856
               HHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox 28 eereeLAkklgLterqVkvWFqNrRakek 56
               +++  LAk+l+L  rqV vWFqNrRa+ k
  462851818 45 KQKVALAKQLNLRPRQVEVWFQNRRARTK 73
               78899**********************98 PP
2HD-ZIP_I/II105.63.9e-344108191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLep...............erKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 
                  +kk+rl+keq++lLE+ F+e+++L+p               ++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke
    462851818   4 RKKLRLTKEQSALLEDRFKEHSTLNPvrtirhpgvrarhvrKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLHKE 101
                  69***********************8666666666655555689****************************************************** PP

  HD-ZIP_I/II  84 veeLreel 91 
                   +eLr +l
    462851818 102 LAELR-AL 108
                  ****9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007114.188175IPR001356Homeobox domain
SMARTSM003894.4E-9279IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.7E-15478IPR009057Homeodomain-like
SuperFamilySSF466892.31E-12483IPR009057Homeodomain-like
CDDcd000863.41E-10476No hitNo description
PfamPF000462.0E-94573IPR001356Homeobox domain
PROSITE patternPS0002705073IPR017970Homeobox, conserved site
SMARTSM003404.8E-2375118IPR003106Leucine zipper, homeobox-associated
PfamPF021832.8E-1175109IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MCTRKKLRLT KEQSALLEDR FKEHSTLNPV RTIRHPGVRA RHVRKQKVAL AKQLNLRPRQ  60
VEVWFQNRRA RTKLKQTEVD CEFLKRCCET LTEENRRLHK ELAELRALKF ASPAPPSATP  120
PAASARPATG WAPRPPPLRP TRTGPPRPAS GQPIPSSTHS PTPPPAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
128TRKKLRL
26775RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462851818
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0977888e-64FP097788.1 Phyllostachys edulis cDNA clone: bphylf059k15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627843.11e-55homeobox-leucine zipper protein HOX19 isoform X1
RefseqXP_015689823.16e-56PREDICTED: homeobox-leucine zipper protein HOX19-like, partial
SwissprotA2XE767e-55HOX19_ORYSI; Homeobox-leucine zipper protein HOX19
SwissprotQ8GRL47e-55HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19
TrEMBLI1P9504e-53I1P950_ORYGL; Uncharacterized protein
STRINGORGLA03G0089600.16e-54(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20553698
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-49homeobox from Arabidopsis thaliana