PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462852167
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family Dof
Protein Properties Length: 119aa    MW: 12282.8 Da    PI: 11.3796
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462852167genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof65.31.1e-204277237
     zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCr 37
               +e  lkcprC+stntkfCy+nnyslsqPr+fCk+Cr
  462852167 42 PEPGLKCPRCESTNTKFCYFNNYSLSQPRHFCKTCR 77
               56789******************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074789.0E-252677IPR003851Zinc finger, Dof-type
PROSITE profilePS5088417.5794699IPR003851Zinc finger, Dof-type
PfamPF027013.0E-184677IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MAPRPDMATV GAATGSGGPI GGSAVRPGSM TERARLAKIP QPEPGLKCPR CESTNTKFCY  60
FNNYSLSQPR HFCKTCRPRA KGAPRRNKRS KSSKSSNSSS AASASAAGGT SSSTSSTPS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269|PubMed:12887587}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462852167
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:12887587}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1044332e-75AC104433.8 Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete sequence.
GenBankAP0149592e-75AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126112e-75CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981250.15e-36dof zinc finger protein DOF2.4
SwissprotQ9M2U11e-28DOF36_ARATH; Dof zinc finger protein DOF3.6
TrEMBLA0A1D6L9X92e-36A0A1D6L9X9_MAIZE; Dof zinc finger protein DOF3.6
TrEMBLA0A3L6SDN72e-36A0A3L6SDN7_PANMI; Dof zinc finger protein DOF2.4-like
STRINGGRMZM2G093725_P013e-37(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48932961
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02460.12e-28Dof family protein