PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462852338
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family CAMTA
Protein Properties Length: 1147aa    MW: 127425 Da    PI: 8.7653
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462852338genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-198.55.4e-3132105275
       CG-1   2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKv 75 
                ++  +rw +++ei+a+L+n++k++++ ++ ++p sg+++Ly+rk+vr+frkDG++wkkkkdgktv+E+hekLK 
  462852338  32 TEAASRWFRPNEIYAVLANHAKFQIVPQPIDKPVSGTVVLYDRKVVRNFRKDGHNWKKKKDGKTVQEAHEKLKP 105
                44499*******************************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143742.58827173IPR005559CG-1 DNA-binding domain
SMARTSM010765.3E-3330139IPR005559CG-1 DNA-binding domain
PfamPF038592.4E-2434111IPR005559CG-1 DNA-binding domain
SuperFamilySSF812962.76E-12369455IPR014756Immunoglobulin E-set
PfamPF018335.3E-4370454IPR002909IPT domain
SuperFamilySSF812962.76E-12606692IPR014756Immunoglobulin E-set
PfamPF018335.3E-4607691IPR002909IPT domain
CDDcd002041.15E-16770898No hitNo description
SuperFamilySSF484036.22E-17784902IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.4E-17790918IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029718.643806910IPR020683Ankyrin repeat-containing domain
PfamPF127969.4E-8812902IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.995839871IPR002110Ankyrin repeat
SMARTSM002484.0E-6839868IPR002110Ankyrin repeat
SMARTSM00248300878907IPR002110Ankyrin repeat
SuperFamilySSF525405.58E-89811056IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000153.810051027IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.8410071035IPR000048IQ motif, EF-hand binding site
PfamPF006120.0510081026IPR000048IQ motif, EF-hand binding site
SMARTSM000150.00410281050IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.49310291053IPR000048IQ motif, EF-hand binding site
PfamPF006127.9E-410301050IPR000048IQ motif, EF-hand binding site
SMARTSM000155.611091131IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.15711111139IPR000048IQ motif, EF-hand binding site
PfamPF006120.09511121131IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1147 aa     Download sequence    Send to blast
MTGGAGGRDP LVASEIHGFL TCADLNFEKL MTEAASRWFR PNEIYAVLAN HAKFQIVPQP  60
IDKPVSGTVV LYDRKVVRNF RKDGHNWKKK KDGKTVQEAH EKLKPFNRTD IWVGSKNRMI  120
RGEARELERI VLVHYRQTSE ENAVPPPNTE PAVAEMPPIN LIHYSSPLTS TDSASARTEH  180
SCAAAATAPE EINSHGGGAI SCESDDPESS LELFWADLLE SSMKNNTSVG GGSLTSNQHT  240
KYGMGDSGNN NFISTNASNN VIFASTVDVH SEAYATNPSL NQVSENYFGA PKHHANQSPF  300
LFTSDLDSQS NQVASSLVKT QPNGIRNDVP VRQNSLGLWK YFEDDVTCLG DNPSSTIPTQ  360
PVTNERIFNI TEISPEWAYS TENTKVLVVG NFHEQYKHLN TNVHCVIGDK IVAADTVQSG  420
VYRFMAAPHT PGRVNLFLTL DGKTPISEVL SFDYRTMPGS SSDSELSSVE DEPNKSKLQM  480
QMRLARLLFS ANKKKLAVIF ASTVDVHSEA YATNPSLNQV SENYFGAPKH HANQSPFLFT  540
SDLDSQSNQV ASSLVKTQPN GIRNDVPVRQ NSLGLWKYFE DDVTCLGDNP SSTIPTQPVT  600
NERIFNITEI SPEWAYSTEN TKVLVVGNFH EQYKHLNTNV HCVIGDKIVA ADTVQSGVYR  660
FMAAPHTPGR VNLFLTLDGK TPISEVLSFD YRTMPGSSSD SELSSVEDEP NKSKLQMQMR  720
LARLLFSANK KKLAPKFLVE GSKVSNLLSA SAEKEWMDLL KFVTDSKGPY VAATEGLLEL  780
MLRNRLQEWL IEKIVEGHKS TGRDDLGQGP IHLCSFLGYT WAIRLFSLSG FSLDFRDSSG  840
WTALHWAAYN GREKMVAALL SAGANPSLVT DPAPGAPGGY TAADLAAKGG YDGLAAYLAE  900
KGLTAHFEAM SLSKDTGRST SRTKSMKQQT KEFEPLSEQE LCLKESLAAY RNAADAASNI  960
QAALRERTLK LQTKAVQLAN PETEAAAIVA AMRIQHAFRN YNRKKVMRAA ARIQTHFRTW  1020
KIRRDFMNMR RQAIKIQAVY RGHQVRRQYR KVIWSVGVVE KAILRWRKKR KGLRGIATGM  1080
AVAMTTDAEP GSTAEEDYYQ IGRQQAEDRF NRSVVRVQAL FRSYRAQQEY RRMKVAHEEA  1140
KVEFCGK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro. Binds to the DNA consensus sequence 5'-T[AC]CG[CT]GT[GT][GT][GT][GT]T[GT]CG-3'. {ECO:0000269|PubMed:16192280}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462852338
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957727.10.0calmodulin-binding transcription activator 6
SwissprotQ7XHR20.0CBT_ORYSJ; Calmodulin-binding transcription activator CBT
TrEMBLA0A1E5V8U60.0A0A1E5V8U6_9POAL; Calmodulin-binding transcription activator 5
STRINGSi028862m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98312933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16940.11e-159calmodulin binding;transcription regulators