PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462852566

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

LBD

Protein Properties

Length: 298aa MW: 31468.7 Da PI: 7.8039

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462852566	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	61.3	2.5e-19	68	113	1	46
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkll 46 +CaaCk+lrr+C+++C++apyf ++p+kfa+vhk+FGasnv+k+l 462852566 68 PCAACKLLRRRCSQECPFAPYFSPHEPHKFAAVHKVFGASNVSKML 113 7*******************************************98 PP
2	DUF260	114.3	8.2e-36	116	208	8	100
DUF260 8 lrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 lrr+C+++C++apyf ++p+kfa+vhk+FGasnv+k+l ++pe er da+sslvyeA+ r+rdPvyG++g i+ lqqq+++l+ael+++++e 462852566 116 LRRRCSQECPFAPYFSPHEPHKFAAVHKVFGASNVSKMLLEVPEAERADAASSLVYEANLRLRDPVYGCMGAISVLQQQVNSLEAELDAIRAE 208 89*************************************************************************************999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	5.3E-19	68	113	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	21.318	108	209	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.6E-36	116	206	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MQQALSNNSA CWASTRDRLD EIGKKIKREP AAAGISALAA SASTAPAENP VPRRLGLGLG 60 GALNTVIPCA ACKLLRRRCS QECPFAPYFS PHEPHKFAAV HKVFGASNVS KMLLLLRRRC 120 SQECPFAPYF SPHEPHKFAA VHKVFGASNV SKMLLEVPEA ERADAASSLV YEANLRLRDP 180 VYGCMGAISV LQQQVNSLEA ELDAIRAEIF KHRYHQPGAT GAAGLVDDAA QARASFDVAP 240 GTPMHAGADV VSVVGAAGQE ASTVAGAPGM PPSSAVYIAE AAEQPSSTTD HHYSSLNS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-37	115	212	17	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-37	115	212	17	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462852566

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK121919	1e-114	AK121919.1 Oryza sativa Japonica Group cDNA clone:J033106D14, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004970407.1	1e-103	LOB domain-containing protein 15
Swissprot	Q9AT61	3e-57	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A1E5VHX5	1e-107	A0A1E5VHX5_9POAL; LOB domain-containing protein 15
STRING	Si004575m	1e-108	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2630	38	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	2e-55	LOB domain-containing protein 13

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]