PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462852838
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family TALE
Protein Properties Length: 642aa    MW: 71336.2 Da    PI: 5.6608
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462852838genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.45.7e-094024391954
                HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                Fe   ++yp+ +e+  LA+++gLt +q+++WF N R +
  462852838 402 FEHflHPYPKDSEKLMLARQTGLTRSQISNWFINARVR 439
                664559******************************88 PP
2BELL118.72.7e-38265336172
       BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                e+qelq+k akL+ +l+eVd++Yk+y++q+q v++sF++vag g+akpYt++Al++iSrhFrcLkdai +qi
  462852838 265 EKQELQNKVAKLMAMLDEVDRKYKHYYHQMQLVVASFDMVAGSGAAKPYTAVALQTISRHFRCLKDAINDQI 336
                689*******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.3E-54189334IPR006563POX domain
PfamPF075262.6E-50195332IPR006563POX domain
PROSITE profilePS5007112.357380443IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.7E-28382452IPR009057Homeodomain-like
CDDcd000861.19E-12383444No hitNo description
SMARTSM003891.6E-9383447IPR001356Homeobox domain
SuperFamilySSF466893.21E-17384449IPR009057Homeodomain-like
PfamPF059201.0E-17400439IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
MATYYSSPGS ERDSQTMYSA ESGDVSYPMP SALGNMLYPN NASAGPYTEF SGIIQHQQNF  60
MELSGHPSSV PHDSSSKEST NMVTSLAEQR SFGPLKDVRN EMLMHLMDGA QSSGSNLIHN  120
DSHNSVQLDF GMLNNHNSTS VPSAPGQGLS LSLNTHILAP SYPYWSVKPD LLAPHSYQGD  180
DDRIKNMQSE ASQAIRNSRY LKAAQELLDE IVSVWKSVKR KEDKGHAEVG KADVKETEGG  240
TNSEGVSSNP QESGANAAAE LSTAEKQELQ NKVAKLMAML DEVDRKYKHY YHQMQLVVAS  300
FDMVAGSGAA KPYTAVALQT ISRHFRCLKD AINDQISIIR KKLGEEENTS GKEGRLTRLR  360
YIDQQLRQQR AFQQYGMLQQ NAWRPQRGLP ENSVSILRAW LFEHFLHPYP KDSEKLMLAR  420
QTGLTRSQIS NWFINARVRL WKPMIEDMYK EEIGEAELDS NSSSDNVSRS KIKVPSFDEK  480
EDLKSSTSQP CQTSQLGESK ANISMMSLSG PPACFNNEAN PDDSFMNLML KDQRPGEMDG  540
SLLHDAVAHH SDDSARFMAY HLAELGRYGN NTVSLTLGLQ HAENSLSVPN TQQTFASVGH  600
EDIYNVTAPL SGAPASSDYE STNQIDQEQR FEPSPLMHDF VA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A3e-16389446158Homeobox protein Meis1
4xrs_B3e-16389446158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462852838
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792966.10.0BEL1-like homeodomain protein 7
RefseqXP_025792967.10.0BEL1-like homeodomain protein 7
TrEMBLA0A0A8Y1Y70.0A0A0A8Y1Y7_ARUDO; Uncharacterized protein
STRINGPavir.Ib04256.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-114BEL1-like homeodomain 6