PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462853150
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 94aa    MW: 10531 Da    PI: 8.7192
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462853150genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding621.3e-191470148
                     TSSS-HHHHHHHHHHHHHTTTT..........-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..........tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd+ lv +v+++G+g           W++Ia++++  Rt++++k++w+++l
        462853150 14 KGPWTPEEDLMLVSYVQEHGPGnwravptntgKWAAIASYLP-ERTDNDIKNYWNTHL 70
                     79****************************************.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.14E-18378IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-13543IPR009057Homeodomain-like
PROSITE profilePS5129421.591974IPR017930Myb domain
SMARTSM007171.6E-171372IPR001005SANT/Myb domain
PfamPF002492.8E-181470IPR001005SANT/Myb domain
CDDcd001672.92E-141670No hitNo description
Gene3DG3DSA:1.10.10.603.2E-124478IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MGRPPCCDKV GVKKGPWTPE EDLMLVSYVQ EHGPGNWRAV PTNTGKWAAI ASYLPERTDN  60
DIKNYWNTHL KKKLKKMQAG EGGAGVPEWP MHEA
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462853150
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1651782e-57AC165178.2 Zea mays clone ZMMBBb-272P17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010939500.11e-44myb-related protein 306
SwissprotB3VTV72e-42MYB60_VITVI; Transcription factor MYB60
TrEMBLA0A0C6WCT43e-46A0A0C6WCT4_9POAL; ScMYB27 protein
TrEMBLA0A368Q1V45e-45A0A368Q1V4_SETIT; Uncharacterized protein
STRINGPavir.Ba01835.1.p3e-44(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.11e-43myb domain protein 94
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]