PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462853210
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 293aa    MW: 31527.5 Da    PI: 8.2523
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462853210genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.5e-171468148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48
                     +g+WT+eEd+llvd v+  G+g+W++ ++  g       ++R++k+c++rw +yl
        462853210 14 KGPWTPEEDKLLVDFVQANGSGNWRLLPKLAGevgvragLNRCGKSCRLRWTNYL 68
                     79***************************************************97 PP
2Myb_DNA-binding476.1e-1574140148
                      TSSS-HHHHHHHHHHHHHTTTT....................-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg....................tWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++TteE+  +++++   G++                    +W+ Ia+ ++ gRt++++k++w+++l
        462853210  74 RGPFTTEEHNTILQLHGIVGNKtgsthdmpshayeigslcdlRWSMIAAQLP-GRTDNEIKNYWNTHL 140
                      89**************************************************.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.003972IPR017930Myb domain
SuperFamilySSF466895.19E-2411136IPR009057Homeodomain-like
SMARTSM007171.5E-131370IPR001005SANT/Myb domain
PfamPF002495.0E-161468IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-231575IPR009057Homeodomain-like
CDDcd001673.83E-101668No hitNo description
SMARTSM007178.4E-1273142IPR001005SANT/Myb domain
PROSITE profilePS5129413.05973144IPR017930Myb domain
PfamPF002499.1E-1274140IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-2376144IPR009057Homeodomain-like
CDDcd001676.30E-876140No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MGRTPCCDGK GVKKGPWTPE EDKLLVDFVQ ANGSGNWRLL PKLAGEVGVR AGLNRCGKSC  60
RLRWTNYLRP DIKRGPFTTE EHNTILQLHG IVGNKTGSTH DMPSHAYEIG SLCDLRWSMI  120
AAQLPGRTDN EIKNYWNTHL KKQLRQELSV AGEDAAARLA ASSASSPAAR HMAQWETARL  180
EAEARLSLMS SSTTATASSS SSASAEHAAA PDIFLRLWNS EVGESFRGAA VHGGHGPDHA  240
TAANIDKRSR GAGRAFLDLA VEEFALLHGR LGAFALFPAA DVLAGASLFT PFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-23141447108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462853210
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6630067e-50AL663006.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0039L24, complete sequence.
GenBankAP0149607e-50AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126127e-50CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008661372.11e-121putative homeodomain-like transcription factor superfamily protein isoform X1
SwissprotQ9M2D94e-76MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A1D6JAX81e-119A0A1D6JAX8_MAIZE; Myb domain protein 17
STRINGPavir.Gb00736.1.p1e-112(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54093157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.17e-71myb domain protein 17