PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462853524
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ERF
Protein Properties Length: 349aa    MW: 37366.5 Da    PI: 4.421
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462853524genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.8e-19119170256
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                +y+GVr+++ +g+++AeIrdp+ +g   r++lg+++++ eAa+a+++a+ +l+g+
  462853524 119 KYRGVRQRP-WGKYAAEIRDPKRRG--SRVWLGTYDSPVEAARAYDRAAFRLRGA 170
                8********.**********96554..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.6E-31118178IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-22119178IPR016177DNA-binding domain
CDDcd000185.92E-29119178No hitNo description
SMARTSM003807.3E-37119183IPR001471AP2/ERF domain
PROSITE profilePS5103224.065119177IPR001471AP2/ERF domain
PfamPF008471.3E-13119169IPR001471AP2/ERF domain
PRINTSPR003671.7E-13120131IPR001471AP2/ERF domain
PRINTSPR003671.7E-13159179IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MDFAGDADDF TALEFIREHL LGGGCSGAPV ASWVVSDEVS VPVLPLPEAE PAAFQPMSFL  60
PHQQHEGYIG MTHYCTGAVP AAAEGEAAFW AHEPAQPVMI MFETSAPAAA AAPVDDFRKY  120
RGVRQRPWGK YAAEIRDPKR RGSRVWLGTY DSPVEAARAY DRAAFRLRGA KAILNFPNEV  180
GSRGADLLAS APAPAAKQGA AASRRKRKQQ EKEDPDVEVV AVVNKAAKTD EVPSSWTSTE  240
VEDPEVVEVV AVVNKTAKTD EFPSPWTSTE VACTSPSSTV STSQTTATAY STGTTSSTAT  300
TVADAGADEG FPMTPSSWSW EQSWEELLDG LPPMSPQPAF VDITDSRVE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-25118182468ATERF1
3gcc_A3e-25118182468ATERF1
5wx9_A1e-241191791474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462853524
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275251e-88KJ727525.1 Zea mays clone pUT5385 AP2-EREBP transcription factor (EREB61) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001140538.12e-80uncharacterized protein LOC100272603
TrEMBLB4FPJ94e-79B4FPJ9_MAIZE; Ethylene-responsive transcription factor ERF105
TrEMBLK4JFF84e-79K4JFF8_MAIZE; AP2-EREBP-type transcription factor (Fragment)
STRINGGRMZM5G805505_P017e-80(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.12e-31ethylene responsive element binding factor 5