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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | 462853658 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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| Family | MYB_related | ||||||||
| Protein Properties | Length: 172aa MW: 19594.6 Da PI: 4.4863 | ||||||||
| Description | MYB_related family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 51.9 | 1.7e-16 | 11 | 52 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
+++WT+eEd l++a+k G+ Wk+Ia+ +g R+++++k++w+
462853658 11 KNKWTEEEDNNLIEAHKICGNS-WKAIANFLG--RSENSVKNHWN 52
689*****************99.********8..**********8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51294 | 17.739 | 6 | 59 | IPR017930 | Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 3.5E-15 | 7 | 55 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 1.09E-12 | 8 | 57 | IPR009057 | Homeodomain-like |
| SMART | SM00717 | 4.8E-15 | 10 | 57 | IPR001005 | SANT/Myb domain |
| Pfam | PF00249 | 5.8E-15 | 11 | 52 | IPR001005 | SANT/Myb domain |
| CDD | cd00167 | 8.26E-12 | 13 | 55 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 172 aa Download sequence Send to blast |
MYGQEYQEVE KNKWTEEEDN NLIEAHKICG NSWKAIANFL GRSENSVKNH WNATKRSIGS 60 RRWVKKKMRE ETFCQFTALE VYIGSLCMNS QPEQLGSDSG HQQQSFPNTF VEPLVSNPHA 120 IGKSNGFSNE VCRSSAGGNT LPDNIDDVQV ASIMDWFTPF EDDDTLDFDE FV |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1a5j_A | 2e-12 | 8 | 60 | 56 | 110 | B-MYB |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | 462853658 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G40360.1 | 2e-18 | myb domain protein 115 | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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