PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462853691
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 105aa    MW: 10790 Da    PI: 11.0492
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462853691genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.63.3e-091748132
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                     +g+WT eEd+ lv ++ ++G g+W+  ar  g
        462853691 17 KGPWTLEEDLVLVSYISEHGEGSWDNLARAAG 48
                     79**************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.5731259IPR017877Myb-like domain
SuperFamilySSF466896.43E-81348IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-91548IPR009057Homeodomain-like
PfamPF002493.3E-71748IPR001005SANT/Myb domain
CDDcd001677.51E-61945No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MAAWMARRCG GEPAVRKGPW TLEEDLVLVS YISEHGEGSW DNLARAAGCG GSTTCGRGCG  60
AAASRRRRTP PSGSSTPGPR SPSTSPAAPT TRSRTTGGPG SRRSC
Cis-element ? help Back to Top
SourceLink
PlantRegMap462853691
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7281934e-49KJ728193.1 Zea mays clone pUT6467 MYB transcription factor (MYB53) mRNA, partial cds.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.11e-10myb domain protein 21