PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462853751

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

bZIP

Protein Properties

Length: 199aa MW: 22046.3 Da PI: 6.9627

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462853751	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	69.6	4.8e-22	96	158	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elk+++rkq+NRe+ArrsR+RK+ae+eeL +++++L +eN++L+ ele+++ke+++l s++ 462853751 96 ERELKKQKRKQSNRESARRSRLRKQAECEELGQRAESLRSENSSLRAELERIRKEYEQLLSQN 158 89**********************************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07777	2.9E-12	6	52	IPR012900	G-box binding protein, multifunctional mosaic region
Gene3D	G3DSA:1.20.5.170	5.9E-17	92	157	No hit	No description
Pfam	PF00170	2.4E-20	96	158	IPR004827	Basic-leucine zipper domain
SMART	SM00338	7.2E-21	96	160	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	13.288	98	161	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.19E-11	99	156	No hit	No description
CDD	cd14702	8.87E-23	101	151	No hit	No description
PROSITE pattern	PS00036	0	103	118	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MDQPPATTSG TTASVYPEWP SFQAYSTMPP HGFFPPPVAA NPQAHPYMWG AQFSKWHILF 60 SITGNGMDYW AAPGSAAVPA MHGKAPAGSA RDQWDERELK KQKRKQSNRE SARRSRLRKQ 120 AECEELGQRA ESLRSENSSL RAELERIRKE YEQLLSQNAS LKERLGGASD SVPDMNEQND 180 GDGSSKKQPD SDAQPGSEP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	118	RRSRLRK
2	112	119	RRSRLRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462853751

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008645200.1	3e-76	transcription factor HBP-1a isoform X1
Refseq	XP_008645201.1	3e-76	transcription factor HBP-1a isoform X2
Swissprot	P23922	7e-54	HBP1A_WHEAT; Transcription factor HBP-1a
TrEMBL	A0A060CYY6	7e-76	A0A060CYY6_MAIZE; BZIP transcription factor (Fragment)
STRING	Pavir.Ab00132.1.p	3e-76	(Panicum virgatum)
STRING	GRMZM2G153144_P01	1e-75	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2147	37	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35530.1	8e-36	basic region/leucine zipper transcription factor 16

Publications ? help Back to Top
Tabata T,Nakayama T,Mikami K,Iwabuchi M HBP-1a and HBP-1b: leucine zipper-type transcription factors of wheat. EMBO J., 1991. 10(6): p. 1459-67 [PMID:2026143] Tabata T, et al. A protein that binds to a cis-acting element of wheat histone genes has a leucine zipper motif. Science, 1989. 245(4921): p. 965-7 [PMID:2772648] Mikami K, et al. Developmental and tissue-specific regulation of the gene for the wheat basic/leucine zipper protein HBP-1a(17) in transgenic Arabidopsis plants. Mol. Gen. Genet., 1995. 248(5): p. 573-82 [PMID:7476857] Nakayama T,Okanami M,Meshi T,Iwabuchi M Dissection of the wheat transcription factor HBP-1a(17) reveals a modular structure for the activation domain. Mol. Gen. Genet., 1997. 253(5): p. 553-61 [PMID:9065688] Okanami M,Meshi T,Tamai H,Iwabuchi M HALF-1, a bZIP-type protein, interacting with the wheat transcription factor HBP-1a contains a novel transcriptional activation domain. Genes Cells, 1996. 1(1): p. 87-99 [PMID:9078369]