PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462854212
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 189aa    MW: 21439.3 Da    PI: 10.853
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462854212genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72e-16552148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd +l   ++++G  +W++ ++  g+ R++k+c++rw +yl
        462854212  5 RGPWTPEEDRILTAHIERHGHSNWRALPKQAGLLRCGKSCRLRWINYL 52
                     89******************************99************97 PP
2Myb_DNA-binding53.94.2e-1758103148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T eE++ +++++++lG++ W++Ia++++ gRt++++k+ w+++l
        462854212  58 RGNFTREEEDAIIQLHHMLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 103
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.26E-30199IPR009057Homeodomain-like
PROSITE profilePS5129417.208152IPR017930Myb domain
SMARTSM007172.5E-13454IPR001005SANT/Myb domain
PfamPF002491.2E-14552IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-24659IPR009057Homeodomain-like
CDDcd001676.97E-11752No hitNo description
PROSITE profilePS5129425.86553107IPR017930Myb domain
SMARTSM007173.2E-1557105IPR001005SANT/Myb domain
PfamPF002494.2E-1658103IPR001005SANT/Myb domain
CDDcd001671.66E-1160103No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2660107IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MGLKRGPWTP EEDRILTAHI ERHGHSNWRA LPKQAGLLRC GKSCRLRWIN YLRPDIKRGN  60
FTREEEDAII QLHHMLGNRW SAIAARLPGR TDNEIKNVWH THLKKRLEPK APTNAAPKRK  120
AKKQQQKQLQ PEVVVLDGPT TVTVSSPEQS LSTTTSAVTT DYSAASSMEN ADGFTSEEST  180
TASGRRRWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-26310725128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of cold tolerance. Negatively regulates beta-amylase genes at the transcriptional level in response to cold stress. Suppresses beta-amylase gene expression by interacting with TIFY11A/JAZ9. Maltose produced by beta-amylases has a role in protecting cell membranes under cold stress conditions in rice and may contribute to the cold tolerance as a compatible solute. {ECO:0000269|PubMed:28062835}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00375DAPTransfer from AT3G23250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462854212
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold stress and flooding. {ECO:0000269|PubMed:28062835}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9734711e-132EU973471.1 Zea mays clone 399373 myb-related protein Myb4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798785.11e-99transcription factor MYB30-like
SwissprotQ6K1S61e-81MYB30_ORYSJ; Transcription factor MYB30
TrEMBLA0A2S3GRM63e-98A0A2S3GRM6_9POAL; Uncharacterized protein
TrEMBLA0A2T7F9753e-98A0A2T7F975_9POAL; Uncharacterized protein
STRINGGRMZM2G095904_P018e-95(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.11e-72myb domain protein 15
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Lv Y, et al.
    The OsMYB30 Transcription Factor Suppresses Cold Tolerance by Interacting with a JAZ Protein and Suppressing β-Amylase Expression.
    Plant Physiol., 2017. 173(2): p. 1475-1491
    [PMID:28062835]