PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462854269
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GRAS
Protein Properties Length: 269aa    MW: 29783 Da    PI: 5.8163
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462854269genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS47.14e-1588144258
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvs 58 
                 +lL++cA+av+ ++++ a +lL +++++asp+gd++qR+a++f+e+L+arla+++s
  462854269  88 CSLLINCAQAVAMDSHRSAMELLMQMKQHASPRGDATQRVAHCFAEGLEARLAGMGS 144
                579**************************************************9766 PP
2GRAS81.21.8e-25146269137257
       GRAS 137 egppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvk 232
                +g p++RiTg++ p sg   + ++eetg+rL++fA ++gvpf+f+  +a+++e++ +++L+++p+E+l+Vn++++  +l d+ v+++s  +rd vL+ ++
  462854269 146 GGVPEVRITGIDLPMSGfhPAARIEETGRRLSNFACQFGVPFKFHS-IASKWEMVCVDDLNIDPDEVLIVNSIVHFGSLSDDGVNIDSpnPRDVVLNNIR 244
                688***********999999**************************.7************************************9999889********* PP

       GRAS 233 slsPkvvvvveqeadhnsesFlerf 257
                +++P+v+++   + +h+++ ++++f
  462854269 245 KMQPDVFILFVMNGSHSAPFLVTQF 269
                ****************888777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098516.2421269IPR005202Transcription factor GRAS
PfamPF035141.4E-1288144IPR005202Transcription factor GRAS
PfamPF035146.1E-23146269IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MFQGSGNGWG LKKRHEQDVL ETEMCRNRKL VAPEPEETGE TVDDVIFNEY DLCLERMKGL  60
RIIVDSKAEK KNRSAHGNQS ANKAVDLCSL LINCAQAVAM DSHRSAMELL MQMKQHASPR  120
GDATQRVAHC FAEGLEARLA GMGSQGGVPE VRITGIDLPM SGFHPAARIE ETGRRLSNFA  180
CQFGVPFKFH SIASKWEMVC VDDLNIDPDE VLIVNSIVHF GSLSDDGVNI DSPNPRDVVL  240
NNIRKMQPDV FILFVMNGSH SAPFLVTQF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462854269
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotO809334e-34SCL9_ARATH; Scarecrow-like protein 9
TrEMBLC5Y8L52e-95C5Y8L5_SORBI; Uncharacterized protein
STRINGSb05g027770.13e-96(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2273846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.12e-36GRAS family protein