PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462854452
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 95aa    MW: 10732.2 Da    PI: 9.02
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462854452genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.12.7e-101056145
                     TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     r  WT+   +l+ +a + + ++   +W+ Iar +g g+++ ++ks++ 
        462854452 10 RSQWTPKQNKLFEQALAVYDKEtpdRWDNIARAVG-GKSADEVKSYYK 56
                     679*****************99*************.**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.298863IPR017884SANT domain
SMARTSM007173.1E-8961IPR001005SANT/Myb domain
PfamPF002496.8E-81056IPR001005SANT/Myb domain
SuperFamilySSF466899.36E-131167IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-51262IPR009057Homeodomain-like
CDDcd001672.68E-71358No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MASMSMSSAR SQWTPKQNKL FEQALAVYDK ETPDRWDNIA RAVGGKSADE VKSYYKLLEH  60
DVHRIENGQV AFPAYRCPGA GMGAYEADRL KHLKI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-27695192RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462854452
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961116.12e-47protein RADIALIS-like 3
SwissprotF4JVB83e-28RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A3L6T7C14e-46A0A3L6T7C1_PANMI; Protein RADIALIS-like 3
TrEMBLK3ZB494e-46K3ZB49_SETIT; Uncharacterized protein
STRINGSi023770m7e-47(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-30RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]