PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462854629
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family LBD
Protein Properties Length: 272aa    MW: 29094.7 Da    PI: 5.7226
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462854629genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26074.22.5e-23181371100
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeee.r..................edamsslvyeAearardPvyGavgvi 80 
                +C aC +++r+C++dCv+ap+fpae+ p++f  vh  FGa+nv ++l+++ +e+ r                  ++a+++ vyeA+ r++dPvyGa+g +
  462854629  18 RCVACELMGRACEPDCVFAPHFPAEDdPARFMSVHAAFGARNVERFLRRVGPEDlRaeaarylvlnaprrmalrDAAAATSVYEARRRQEDPVYGALGDV 117
                6***********************8779**********************777757999**************99999999******************* PP

     DUF260  81 lklqqqleqlkaelallkee 100
                l  +  l+ + +ela+++e+
  462854629 118 LLCELYLKMTMEELAATRER 137
                **************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.63417138IPR004883Lateral organ boundaries, LOB
PfamPF031954.3E-171888IPR004883Lateral organ boundaries, LOB
PfamPF031959.8E-590135IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MSSKGKGKAV VHSSGGGRCV ACELMGRACE PDCVFAPHFP AEDDPARFMS VHAAFGARNV  60
ERFLRRVGPE DLRAEAARYL VLNAPRRMAL RDAAAATSVY EARRRQEDPV YGALGDVLLC  120
ELYLKMTMEE LAATRERLVP YVGREAAYRT FTRKPRRRIP PATMQQVQDR MQGVVGRVMQ  180
QVAAEAAAGV TTFLTPLHEK LVMSHSNAPG SSGASGPGPA QPATDAAAKD PGLPDGGEDA  240
GDDANESSQA QDPGLQEGGE DAGDETSQVL WN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-17151418114LOB family transfactor Ramosa2.1
5ly0_B8e-17151418114LOB family transfactor Ramosa2.1
Cis-element ? help Back to Top
SourceLink
PlantRegMap462854629
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23660.29e-21LOB domain-containing protein 10