PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462854896
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ERF
Protein Properties Length: 204aa    MW: 21449 Da    PI: 10.567
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462854896genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.3e-20126174355
        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                y+GVr+++ +g+W+AeIrdp+    + +r +lg+f tae+Aa+a++aa+++l+g
  462854896 126 YRGVRRRP-WGKWAAEIRDPK----KaARLWLGTFVTAEDAARAYDAAALRLRG 174
                9*******.**********94....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.6E-14125174IPR001471AP2/ERF domain
SMARTSM003805.1E-36125188IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-33125184IPR001471AP2/ERF domain
PROSITE profilePS5103225.356125182IPR001471AP2/ERF domain
PRINTSPR003672.2E-14126137IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-22126183IPR016177DNA-binding domain
CDDcd000182.04E-14133183No hitNo description
PRINTSPR003672.2E-14164184IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MQIPPTSSQA LEASFPVDAE SAAIVAALTQ VLSHGRGATT RPTPPAVLVA PSPCSRTATF  60
SHTWSVGVQA ACQGEEPAAS AGNVSVQDGI AQSPRLLVAS GTRTPMSSAW SKETEQRAAA  120
SIRRSYRGVR RRPWGKWAAE IRDPKKAARL WLGTFVTAED AARAYDAAAL RLRGSRAKLN  180
FPEEASGTED AANGSGKSKS ATYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-24124189470ATERF1
3gcc_A1e-24124189470ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462854896
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821598.17e-37ethylene-responsive transcription factor ERF110-like
TrEMBLK3YYC03e-42K3YYC0_SETIT; Uncharacterized protein
STRINGSi019270m6e-43(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150381120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.12e-16related to AP2 6l