PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462855275
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GRAS
Protein Properties Length: 92aa    MW: 10815.3 Da    PI: 8.519
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462855275genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS46.94.8e-15179295373
       GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                +n++a eg++r e  et+++W+ r ++aG++++pl++ ++k ++   +      + ++ ++++l+ gWk+r L+++S W
  462855275   1 MNLIASEGSDRDEHPETYKQWQVRNHRAGLRQLPLDSCVVKLVRDKAKDQFRTDFVIDVDHQWLLEGWKGRILYAMSTW 79 
                599******************************************999988777************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098510.369160IPR005202Transcription factor GRAS
PfamPF035141.7E-12179IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MNLIASEGSD RDEHPETYKQ WQVRNHRAGL RQLPLDSCVV KLVRDKAKDQ FRTDFVIDVD  60
HQWLLEGWKG RILYAMSTWH KGGGSLIRLH ME
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462855275
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826966.14e-39scarecrow-like protein 30
SwissprotQ9SNB86e-24SCL30_ARATH; Scarecrow-like protein 30
TrEMBLA0A2S3IFW68e-38A0A2S3IFW6_9POAL; Uncharacterized protein
STRINGSb02g034550.14e-36(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3742233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46600.13e-26GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]