PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462855278
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GRAS
Protein Properties Length: 199aa    MW: 22416.7 Da    PI: 5.9988
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462855278genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS133.13.2e-41219794271
       GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl.......... 181
                ++   N +I +av+g ++vHi+ +++++GlQWp++l+ La+R++g+ ++RiTg++ p++g   + ++ee+g+rL++fA+++gvp +f+ +          
  462855278   2 AFTFSNTTIWNAVAGRKKVHILYYGVGYGLQWPNFLRLLAARKGGALEVRITGIDLPQPGfhPAATIEEIGRRLSNFARQFGVPCKFHSItskwetvcvd 101
                56779******************************************************9999**************************86666666666 PP

       GRAS 182 ....vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                     a+++e++ +++L+++ +E+l+Vn++++  +l d+ v+++s  +rd vL+ +++++P+v+++   + +h ++ F++rf eal y sa++ ++
  462855278 102 dlniDADEWETVCVDDLNIDADEVLIVNSIVHFGSLSDDGVNIDSpnPRDVVLNNIRKMQPDVFILFVMNGSHRAPIFVTRFREALFYNSAILTCW 197
                655444566666677777777********************9999889********************************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098530.4331199IPR005202Transcription factor GRAS
PfamPF035141.1E-382197IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MAFTFSNTTI WNAVAGRKKV HILYYGVGYG LQWPNFLRLL AARKGGALEV RITGIDLPQP  60
GFHPAATIEE IGRRLSNFAR QFGVPCKFHS ITSKWETVCV DDLNIDADEW ETVCVDDLNI  120
DADEVLIVNS IVHFGSLSDD GVNIDSPNPR DVVLNNIRKM QPDVFILFVM NGSHRAPIFV  180
TRFREALFYN SAILTCWMP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B2e-126164186329Protein SHORT-ROOT
5b3h_B2e-126164132275Protein SHORT-ROOT
5b3h_E2e-126164132275Protein SHORT-ROOT
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462855278
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021316532.15e-79scarecrow-like protein 9
RefseqXP_025826966.19e-79scarecrow-like protein 30
TrEMBLA0A3L6PL532e-78A0A3L6PL53_PANMI; Uncharacterized protein
STRINGPavir.Ha00318.1.p2e-79(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2273846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-43GRAS family protein