PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462856043
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family LSD
Protein Properties Length: 258aa    MW: 27909 Da    PI: 9.3618
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462856043genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD128.91.9e-093659124
    zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdt 24
               C+gC t+L Y rGA+++RC++C t
  462856043 36 CNGCPTILVYNRGATNIRCPNCRT 59
               **********************98 PP
2zf-LSD128.91.9e-09157180124
    zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdt 24 
                C+gC t+L Y rGA+++RC++C t
  462856043 157 CNGCPTILVYNRGATNIRCPNCRT 180
                **********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010536.4E-93461IPR005735Zinc finger, LSD1-type
PfamPF069438.5E-93659IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.8E-474104IPR005735Zinc finger, LSD1-type
PfamPF069436.2E-677101IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010536.4E-9155182IPR005735Zinc finger, LSD1-type
PfamPF069438.5E-9157180IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.8E-4193223IPR005735Zinc finger, LSD1-type
PfamPF069436.2E-6196220IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MFLTQKNPIA GMQDQLYCNT FTSVNPSAGK MSELVCNGCP TILVYNRGAT NIRCPNCRTL  60
NSTRSGAGAN QMGQLQCGRC PTTLAYQLGA STVGCPRCRH VNHVRDARPQ TVLVENPKTL  120
DDKGKLKNPI AGMQDQLYCN TFTSVNPSAG KMSELVCNGC PTILVYNRGA TNIRCPNCRT  180
LNSTRSGANQ MGQLQCGRCP TTLAYQLGAS TVGCPRCRHV NHVRDARPQT VLVENPKTLD  240
DKGKLVSNVA VGVASWKR
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462856043
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021320000.13e-57protein LOL4 isoform X3
RefseqXP_021320001.13e-57protein LOL4 isoform X3
SwissprotQ84UR08e-56LOL4_ORYSJ; Protein LOL4
TrEMBLC5YMW97e-55C5YMW9_SORBI; Uncharacterized protein
STRINGSb07g002500.11e-55(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123332938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.82e-23LSD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]