PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462856439
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GRAS
Protein Properties Length: 543aa    MW: 60054.5 Da    PI: 5.202
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462856439genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4332.2e-1321735421373
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                l++++++c +av+++dl  ++ l+++l +l+s +gdpmqRl ay++e++ arl++s+s lyk+l+++e +   sse ++++ l++e++P++kf+++ aN 
  462856439 173 LKQVIIACGKAVAENDLFSTELLISELGQLVSVSGDPMQRLGAYMLEGIVARLSSSGSMLYKSLKCKEPT---SSELMSYMGLLYEICPFFKFGYMSANG 269
                57899****************************************************************9...999************************ PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                aI ea++ge+ vHiiDf+i qG QW++L+qaLa+Rp+gpp +RiTg+++++s   +   l  +g rL ++A+++g+pfefn+ v  + ++++le+L+++p
  462856439 270 AIAEAIKGENFVHIIDFQIAQGSQWITLIQALAARPGGPPCIRITGIDDSNSAyaRGGGLDIVGMRLYNVAQSCGLPFEFNA-VPAASHEVQLEHLDIRP 368
                *************************************************988899999************************.7999************* PP

       GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                +E++aVn+++qlh+++desvs+e++rd++++++ks++P+vv++veqe+++n+++F+ r +e+l+yy+a+f+s+++ lpr+++ r++ E+++++r+ivn++
  462856439 369 REVIAVNFAYQLHHVPDESVSMENHRDRIIRMIKSINPRVVTLVEQESNTNTAPFFPRYMETLNYYTAMFESIDVALPRDDRRRMSTEQHCVARDIVNLI 468
                **************************************************************************************************** PP

       GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                acegaer+erhe ++kW++r+ +aGF+p+pls+ +++++++llr ++  gyr+ee +g l+lgWk+r Lv+ SaW
  462856439 469 ACEGAERVERHELFGKWKARFAMAGFRPYPLSSVVNNTISTLLRSYN-SGYRLEETDGVLYLGWKNRVLVVSSAW 542
                ***********************************************.99************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.77147524IPR005202Transcription factor GRAS
PfamPF035147.7E-130173542IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MSAQASNHHP YKCSDDSQMA YYNNSMPSGE NGGFYAMQNN LDHHYSSSDD GSQRINSSNP  60
QVFDAQYCTL ESSSGNGVYP AQSSTSSHSI SPISGSPLSQ HDSHSDHTYN SPPSASCLTE  120
VADLQVKLKE LENAILGPEL DITSDSPESF LQTNAPLRPD NWKQLLGIDT GDLKQVIIAC  180
GKAVAENDLF STELLISELG QLVSVSGDPM QRLGAYMLEG IVARLSSSGS MLYKSLKCKE  240
PTSSELMSYM GLLYEICPFF KFGYMSANGA IAEAIKGENF VHIIDFQIAQ GSQWITLIQA  300
LAARPGGPPC IRITGIDDSN SAYARGGGLD IVGMRLYNVA QSCGLPFEFN AVPAASHEVQ  360
LEHLDIRPRE VIAVNFAYQL HHVPDESVSM ENHRDRIIRM IKSINPRVVT LVEQESNTNT  420
APFFPRYMET LNYYTAMFES IDVALPRDDR RRMSTEQHCV ARDIVNLIAC EGAERVERHE  480
LFGKWKARFA MAGFRPYPLS SVVNNTISTL LRSYNSGYRL EETDGVLYLG WKNRVLVVSS  540
AWC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-591755426374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462856439
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983228.10.0scarecrow-like protein 21
RefseqXP_004983229.10.0scarecrow-like protein 21
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLA0A0A9EAW10.0A0A0A9EAW1_ARUDO; GRAS54
STRINGSi035053m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151337117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]