PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462856810
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 237aa    MW: 25897.1 Da    PI: 6.5077
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462856810genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.81.4e-141466148
                     TSSS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT++Ed +l ++++ +G g        ++I ++++ gRt++++k++w ++l
        462856810 14 KGTWTPDEDHKLMNYIQNHGHGswralpELAAIGKHLP-GRTDNEIKNFWKTHL 66
                     799*******************6666666677888888.***********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.073970IPR017930Myb domain
SuperFamilySSF466892.01E-141076IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-211267IPR009057Homeodomain-like
SMARTSM007172.3E-101368IPR001005SANT/Myb domain
PfamPF002491.7E-131466IPR001005SANT/Myb domain
CDDcd001673.87E-121666No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MGRPPCGDET GLKKGTWTPD EDHKLMNYIQ NHGHGSWRAL PELAAIGKHL PGRTDNEIKN  60
FWKTHLRKKL IQMGIDPMTH CPRTDFFAAP SQLIMLANLR QLSELQPWDG HTTGPQIEAV  120
QADNLQFMQS LLESAASITP SPTTISSLSS LSDLEQISLL FPQHIFSSTR PAIGNVNLSS  180
NNKVISSEQC NVEGDNSRKK TMLLPENSLP PLTGTSASNP NAVSASEYDG NSTSLPS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462856810
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811434.18e-99transcription factor MYB93-like
SwissprotQ9S9Z25e-49MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A2S3HK702e-97A0A2S3HK70_9POAL; Uncharacterized protein
STRINGSi008086m5e-98(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112637132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.14e-47myb domain protein 93
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]