PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462857158

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

Nin-like

Protein Properties

Length: 825aa MW: 92003.6 Da PI: 7.4058

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462857158	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	88.1	7.3e-28	497	548	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isl+++++yFs+++k+AAk+Lgvc+T++KriCRq+GI+RWP+R+i+++ 462857158 497 AEKTISLDVIQQYFSGSLKSAAKSLGVCPTTMKRICRQHGISRWPSRQISKV 548 589**********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.234	487	568	IPR003035	RWP-RK domain
Pfam	PF02042	7.8E-25	500	548	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.11E-18	739	823	No hit	No description
SMART	SM00666	2.5E-14	749	820	IPR000270	PB1 domain
PROSITE profile	PS51745	15.524	749	822	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.6E-19	750	824	No hit	No description
Pfam	PF00564	1.8E-12	750	814	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 825 aa Download sequence Send to blast
MLLAFGFFYA LVVKLVGNSE TTEIGEYFNG KCQVHLSLVD DYSDSSFFLK QRLTLALRYL 60 KESTNQHLLV QIWAPIRNGG RYIRSTSGQP FVLDQRSIGL LQYRAISMMY TFSIDGDSLQ 120 DLGLPGRVFK QRVPEWTPNV QYYRSTEYAR LDHAISYNVH GTVALPVFDP TVKSCIAVLE 180 LIMTSKKINY SSEIDKVCKA LETVNLRSTE VIEHPYICNE RHQAALADML EVLTVTCEEL 240 KLPLAQTWVP CKYQNLLTHF GGVKKSCFSA HESCVQESCM SASDVAFHVT DAFMWGFRDA 300 CVAHHLLKGQ GVSGKAFILR RPCFSSDVTR FSKMEYELVH YARMFGLAGC FSICLQSAYT 360 GNDDYILEFF LPPDCRNNDD QKVLLGSILA VLRQHLHSLR VATDDGSNEV CLQVGAITVI 420 GNEEIEDAHI HHLNFKSGMH GTKESDSMTI ISSTNYERRL LHENEFKCHA KTTSDFTSDS 480 SLVDINGKHN GRRRGKAEKT ISLDVIQQYF SGSLKSAAKS LGVCPTTMKR ICRQHGISRW 540 PSRQISKVNR SISRLKKVIE SVEGPEGAFN LTAITCPVSV PFRQFSSLNK EKGRENKVTE 600 VSIPSAQERK GSPSHNKPLE SGGLLRTSRS QHPFLADIST LVEVEKASNL RSSSGEPSTR 660 SGTSDESCHG SPANNTLDVS VTLVEPQQNM CKQDELKEEP SQGQNLLFSS LFANGSESSR 720 HFRNRAISSV TQPTVAPTGN LMSVQNSDII TVKACYKDAI LRFRFPLSGS FVALKDEVAK 780 RVQMDAGLFD IKYLDDENEW VKLTCDADLA ECLDISLLPG TSVLR

Sequence ? help Back to Top

Protein Sequence Length: 825 aa Download sequence Send to blast

MLLAFGFFYA LVVKLVGNSE TTEIGEYFNG KCQVHLSLVD DYSDSSFFLK QRLTLALRYL  60
KESTNQHLLV QIWAPIRNGG RYIRSTSGQP FVLDQRSIGL LQYRAISMMY TFSIDGDSLQ  120
DLGLPGRVFK QRVPEWTPNV QYYRSTEYAR LDHAISYNVH GTVALPVFDP TVKSCIAVLE  180
LIMTSKKINY SSEIDKVCKA LETVNLRSTE VIEHPYICNE RHQAALADML EVLTVTCEEL  240
KLPLAQTWVP CKYQNLLTHF GGVKKSCFSA HESCVQESCM SASDVAFHVT DAFMWGFRDA  300
CVAHHLLKGQ GVSGKAFILR RPCFSSDVTR FSKMEYELVH YARMFGLAGC FSICLQSAYT  360
GNDDYILEFF LPPDCRNNDD QKVLLGSILA VLRQHLHSLR VATDDGSNEV CLQVGAITVI  420
GNEEIEDAHI HHLNFKSGMH GTKESDSMTI ISSTNYERRL LHENEFKCHA KTTSDFTSDS  480
SLVDINGKHN GRRRGKAEKT ISLDVIQQYF SGSLKSAAKS LGVCPTTMKR ICRQHGISRW  540
PSRQISKVNR SISRLKKVIE SVEGPEGAFN LTAITCPVSV PFRQFSSLNK EKGRENKVTE  600
VSIPSAQERK GSPSHNKPLE SGGLLRTSRS QHPFLADIST LVEVEKASNL RSSSGEPSTR  660
SGTSDESCHG SPANNTLDVS VTLVEPQQNM CKQDELKEEP SQGQNLLFSS LFANGSESSR  720
HFRNRAISSV TQPTVAPTGN LMSVQNSDII TVKACYKDAI LRFRFPLSGS FVALKDEVAK  780
RVQMDAGLFD IKYLDDENEW VKLTCDADLA ECLDISLLPG TSVLR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462857158

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025805501.1	0.0	protein NLP3-like isoform X1
Swissprot	Q5NB82	0.0	NLP3_ORYSJ; Protein NLP3
TrEMBL	A0A1E5VMG9	0.0	A0A1E5VMG9_9POAL; Protein NLP3
STRING	Pavir.Ca00444.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4778	36	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	0.0	Nin-like family protein