PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462857363
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WOX
Protein Properties Length: 214aa    MW: 23947.2 Da    PI: 8.8119
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462857363genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.9e-1867126357
                --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                +R+++ +eq+++Le l++   r+p+  ++e ++++l    +++ ++V++WFqN++a+e++
  462857363  67 TRWNPCPEQIKVLEMLYRGgMRTPNSFQIECITEELgkygRIEGKNVFYWFQNHKARERQ 126
                8*****************99**************************************97 PP
2Wus_type_Homeobox112.81.8e-3666128365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +tRW+P peQik+Le+ly+ G+rtPn+ +i+ it+eL +yG+ie+kNVfyWFQN+kaRerqkq
          462857363  66 TTRWNPCPEQIKVLEMLYRGGMRTPNSFQIECITEELGKYGRIEGKNVFYWFQNHKARERQKQ 128
                        79***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003896.2E-464131IPR001356Homeobox domain
SuperFamilySSF466893.29E-1167132IPR009057Homeodomain-like
PfamPF000466.0E-1667126IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-668126IPR009057Homeodomain-like
PROSITE profilePS500719.00574127IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
PSSSSSSISP SLTTSAIPLA LQCLRPLGPK ISFPESRKMV ILPEFARVRN ASRLLKYTVQ  60
VPMSGTTRWN PCPEQIKVLE MLYRGGMRTP NSFQIECITE ELGKYGRIEG KNVFYWFQNH  120
KARERQKQKR AALLTLSTTS SLPETKDGAE KKEASEEDAV SCKRRCKSWG DDVHGDRDAA  180
TEVADDCTND EVTLELFPLH PQGKDTNKPA TTRS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462857363
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL4420071e-78AL442007.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0212B02, complete sequence.
GenBankAL6066351e-78AL606635.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010D21, complete sequence.
GenBankAL6066921e-78AL606692.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0059K02, complete sequence.
GenBankAP0149601e-78AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126121e-78CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankJF8361591e-78JF836159.1 Oryza sativa Japonica Group WUSCHEL-like homeobox protein (WOX4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977039.16e-98WUSCHEL-related homeobox 4
SwissprotQ25AM21e-93WOX4_ORYSI; WUSCHEL-related homeobox 4
SwissprotQ7XTV31e-93WOX4_ORYSJ; WUSCHEL-related homeobox 4
TrEMBLA0A0A9HK031e-101A0A0A9HK03_ARUDO; Uncharacterized protein
STRINGSi012229m2e-97(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126923035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.12e-41WUSCHEL related homeobox 4