PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462857429
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family TALE
Protein Properties Length: 255aa    MW: 27808.3 Da    PI: 6.0509
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462857429genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.31.5e-091872202255
                SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
   Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                 +yp++e++ +LA+ +gL+ +q+ +WF N+R ++
  462857429 187 WPYPTEEDKVRLAAMTGLDPKQINNWFINQRKRH 220
                59*****************************885 PP
2ELK31.15.3e-11140161122
        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                ELK++Ll+KYsg+L+ L++ F+
  462857429 140 ELKEMLLKKYSGCLSRLRSDFL 161
                9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012557.5E-162266IPR005540KNOX1
PfamPF037905.9E-192663IPR005540KNOX1
PROSITE profilePS512139.725140160IPR005539ELK domain
SMARTSM011881.1E-5140161IPR005539ELK domain
PfamPF037892.7E-8140161IPR005539ELK domain
PROSITE profilePS5007112.681160223IPR001356Homeobox domain
SuperFamilySSF466895.56E-20162232IPR009057Homeodomain-like
SMARTSM003892.5E-14162227IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-27165225IPR009057Homeodomain-like
CDDcd000861.50E-13172224No hitNo description
PfamPF059203.9E-17180219IPR008422Homeobox KN domain
PROSITE patternPS000270198221IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MEDLYSIHPG ISRAGGGAAA TSDRGAQIAG HPRYPTLLSA YIECRKVGAP PEVAALLEEI  60
GRERCAAASA AGEVGLDPEL DEFMAASFLS SVRTQLTSLC GGAASLSDEM VGSSEDEPCS  120
GDTDATDLGQ EHSSRLADRE LKEMLLKKYS GCLSRLRSDF LKKRKKGKLP KDARSALMDW  180
WNTHYRWPYP TEEDKVRLAA MTGLDPKQIN NWFINQRKRH WKPSEDMRFA LMEGVTGGGS  240
SSGTTLYFDT GTIGP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155164LRSDFLKKRK
2161165KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462857429
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105084.11e-150liguleless 4
SwissprotQ9FP291e-127KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLA0A0A9BTH01e-152A0A0A9BTH0_ARUDO; Uncharacterized protein
STRINGGRMZM2G094241_P011e-149(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16983892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.16e-69KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]