PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462857618
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C2H2
Protein Properties Length: 150aa    MW: 16839.8 Da    PI: 4.4227
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462857618genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.000712746321
               ET.TTTEEESSHHHHHHHHH CS
    zf-C2H2  3 Cp.dCgksFsrksnLkrHir 21
               Cp dC + F++++++ rH+ 
  462857618 27 CPvDCVTEFKTNDEFARHLE 46
               999***************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5135210.1131146IPR013766Thioredoxin domain
SuperFamilySSF528332.0E-1730147IPR012336Thioredoxin-like fold
Gene3DG3DSA:3.40.30.104.2E-1933144IPR012336Thioredoxin-like fold
PfamPF000857.1E-1336143IPR013766Thioredoxin domain
CDDcd029477.01E-1939141No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045454Biological Processcell redox homeostasis
GO:0009570Cellular Componentchloroplast stroma
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
SEEEATGSTN GSLPGLPPVE EDDDEFCPVD CVTEFKTNDE FARHLERAKA TGALVVVDFF  60
RPSCGSCKYI ERGFTRLCKG SGDDGAPVVF LKHNVIDEYD EQSEVAERLR IKVVPLFHFY  120
KDGELVESFA TRDKERIIAA IRKYTSIEPE
Functional Description ? help Back to Top
Source Description
UniProtProbable thiol-disulfide oxidoreductase that may participate in various redox reactions.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462857618
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9717871e-150EU971787.1 Zea mays clone 370672 thioredoxin-like 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816469.12e-91thioredoxin-like 4, chloroplastic
SwissprotQ6YTI31e-70TRL4_ORYSJ; Thioredoxin-like 4, chloroplastic
TrEMBLA0A1E5VAN45e-91A0A1E5VAN4_9POAL; Thioredoxin-like 4, chloroplastic
STRINGPavir.Ab02055.1.p6e-87(Panicum virgatum)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chibani K,Wingsle G,Jacquot JP,Gelhaye E,Rouhier N
    Comparative genomic study of the thioredoxin family in photosynthetic organisms with emphasis on Populus trichocarpa.
    Mol Plant, 2009. 2(2): p. 308-22
    [PMID:19825616]