PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462857966
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HSF
Protein Properties Length: 208aa    MW: 23449.8 Da    PI: 6.9258
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462857966genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind102.24.5e-32231142102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F+ k++++++d++++ +++w   +n+f+vld+  f++ +Lp+yFkh+nfaSFvRQLn+YgF+kv++++         weF+h+ F +g+++ll  i 
     462857966  23 FVAKTFHMVSDPATDAVVRWGVASNTFLVLDPAAFSEYLLPSYFKHRNFASFVRQLNTYGFRKVDTDR---------WEFAHQLFLRGQTQLLPLIV 110
                   9********************999******************************************99.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   rkk+
     462857966 111 RKKK 114
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.7E-3515106IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.7E-4319112IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.24E-2921112IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.2E-172346IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.4E-2823112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.2E-176173IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406286IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.2E-177486IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MGSECKGQLL QLHAAEQQQE QPFVAKTFHM VSDPATDAVV RWGVASNTFL VLDPAAFSEY  60
LLPSYFKHRN FASFVRQLNT YGFRKVDTDR WEFAHQLFLR GQTQLLPLIV RKKKPGCRDL  120
CEEGEEVRGT IRAVQRLREE QRGMEEELQA MDQRLQAAES RPGQMLAFLA KLADEPGVVL  180
RAMLGKKEEL AAAGGGMIKG SEEQTCYG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-251411220129Heat shock factor protein 1
5d5v_B2e-251411220129Heat shock factor protein 1
5d5v_D2e-251411220129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462857966
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9540421e-160EU954042.1 Zea mays clone 1452946 heat shock factor protein HSF30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633152.11e-112heat stress transcription factor C-1b
SwissprotQ942D61e-113HFC1B_ORYSJ; Heat stress transcription factor C-1b
TrEMBLA0A0E0N2341e-110A0A0E0N234_ORYRU; Uncharacterized protein
STRINGORUFI01G33030.11e-111(Oryza rufipogon)
STRINGOS01T0733200-011e-111(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112983141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.13e-60heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Schmidt R, et al.
    Transcription factor OsHsfC1b regulates salt tolerance and development in Oryza sativa ssp. japonica.
    AoB Plants, 2012. 2012: p. pls011
    [PMID:22616023]