PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462858153
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 301aa    MW: 32431.6 Da    PI: 7.1343
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462858153genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.72e-32171228259
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                +Dgy+WrKYGqK vk+s +prsYYrCt a+C vkk vers++dp+ v++tYeg+H+h+
  462858153 171 EDGYRWRKYGQKAVKNSSYPRSYYRCTAARCGVKKLVERSQQDPSSVITTYEGQHTHP 228
                8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-33157230IPR003657WRKY domain
SuperFamilySSF1182901.7E-28162230IPR003657WRKY domain
PROSITE profilePS5081130.446165230IPR003657WRKY domain
SMARTSM007743.3E-37170229IPR003657WRKY domain
PfamPF031065.1E-26171228IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MSGPAAAAAA AGEGGLHGDP TAGFFNPFDH HDDVDSFFLR RSPGIPGEGG DGLAAYSSSI  60
TDYLQGFLQD DDGVVKQEMV VQAAVSGHDD RLPGASATPN SSSSGAVCGE ETRRRCKKGT  120
PEEEEEENDD EDEEGSAADR SCKKRSKGEK KKKERLPRVA FMTKSEVDHL EDGYRWRKYG  180
QKAVKNSSYP RSYYRCTAAR CGVKKLVERS QQDPSSVITT YEGQHTHPSP VGLGGRVARL  240
PAIADDAAAA PRLHAEQLTA FWQWHSASDD APSSAGAPHF VAAGGCVRRR AGPRRPAHKH  300
R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-26161230877Probable WRKY transcription factor 4
2lex_A4e-26161230877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462858153
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586073e-83KU058607.1 UNVERIFIED: Panicum miliaceum WRKY7-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961086.14e-67probable WRKY transcription factor 57
SwissprotQ8VWJ21e-42WRK28_ARATH; WRKY transcription factor 28
TrEMBLK3Z7P81e-65K3Z7P8_SETIT; Uncharacterized protein
STRINGSi022568m2e-66(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.15e-41WRKY DNA-binding protein 28
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kim SH, et al.
    Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis.
    Mol. Cells, 2014. 37(11): p. 833-40
    [PMID:25358503]
  4. Zhao L, et al.
    KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535
    [PMID:29288215]