PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462858454
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 374aa    MW: 41542.6 Da    PI: 10.1841
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462858454genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B365.11e-2019117198
                EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                ffkvl   +   ++rl +p +f++++        ++  e s+  tle +sgr+W v +  r++ +++++t+GW +Fv+++ L+e +f+vF++dg+++f  
  462858454  19 FFKVL---MGDFKKRLKIPPNFCKHIpweasrkaKSLREASMAATLEGPSGRTWLVVI--RRSAEGTFFTSGWPKFVQDQALRELEFLVFRYDGNTRF-- 111
                66777...4455668********888***999885555689*****************..*********************************99999.. PP

                EEEEE- CS
         B3  93 vvkvfr 98 
                + +vf+
  462858454 112 TATVFD 117
                667766 PP
2B3512.6e-16270356598
                -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                +++ +v  s ++++p  f ++h   ++e ++++l+d+ g+ W v +i  ++++r  l++GW  F++ n L+egD +vF+l+   ef  +v++fr
  462858454 270 MSTMHVYYSFMMRFPTGFSRQHL--PRERTDVVLRDPGGKAWVVLYI-PNTRDR--LSRGWCAFARGNCLEEGDYCVFELVAAAEF--RVHIFR 356
                67788999999********9995..345679***************4.444455..9**********************9986666..999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-2014119IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.7E-2114119IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.1416119IPR003340B3 DNA binding domain
CDDcd100171.25E-1917117No hitNo description
SMARTSM010193.0E-1319119IPR003340B3 DNA binding domain
PfamPF023623.4E-1819115IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-23259356IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-21259356IPR015300DNA-binding pseudobarrel domain
CDDcd100172.81E-24264356No hitNo description
SMARTSM010191.9E-9266358IPR003340B3 DNA binding domain
PROSITE profilePS5086313.86266358IPR003340B3 DNA binding domain
PfamPF023623.3E-15269356IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MPASERQSPW ASGERRPHFF KVLMGDFKKR LKIPPNFCKH IPWEASRKAK SLREASMAAT  60
LEGPSGRTWL VVIRRSAEGT FFTSGWPKFV QDQALRELEF LVFRYDGNTR FTATVFDTSG  120
TAASRGGVAR ATKSKDAAVG KELVPYRAPG DRQLQVAGTP ELAAGAVKAE VEDADELALC  180
VVIPAPPPSP PARGPGMMAS QQADGAAATK TRSIQDDLAA VEEDIPASVR RYKGYGYVPR  240
RRPATGAERQ RAMELAYAFR SSLPYCVMRM STMHVYYSFM MRFPTGFSRQ HLPRERTDVV  300
LRDPGGKAWV VLYIPNTRDR LSRGWCAFAR GNCLEEGDYC VFELVAAAEF RVHIFRVVDP  360
PVPAVRLRTT TTTA
Cis-element ? help Back to Top
SourceLink
PlantRegMap462858454
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032291e-92AP003229.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0022F10.
GenBankAP0149571e-92AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-92CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969798.10.0B3 domain-containing protein Os01g0723500 isoform X1
SwissprotQ8S2E60.0Y1235_ORYSJ; B3 domain-containing protein Os01g0723500
TrEMBLA0A3L6R4E10.0A0A3L6R4E1_PANMI; B3 domain-containing protein
STRINGSb03g033260.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127923135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-21B3 family protein